{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,23]],"date-time":"2026-03-23T13:35:10Z","timestamp":1774272910106,"version":"3.50.1"},"reference-count":16,"publisher":"Oxford University Press (OUP)","issue":"14","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1607,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,7,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Analysis of microbial genomes often requires the general organization and comparison of tens to thousands of genomes both from public repositories and unpublished sources. MicrobeDB provides a foundation for such projects by the automation of downloading published, completed bacterial and archaeal genomes from key sources, parsing annotations of all genomes (both public and private) into a local database, and allowing interaction with the database through an easy to use programming interface. MicrobeDB creates a simple to use, easy to maintain, centralized local resource for various large-scale comparative genomic analyses and a back-end for future microbial application design.<\/jats:p>\n               <jats:p>Availability: MicrobeDB is freely available under the GNU-GPL at: http:\/\/github.com\/mlangill\/microbedb\/<\/jats:p>\n               <jats:p>Contact: \u00a0morgan.g.i.langille@gmail.com<\/jats:p>","DOI":"10.1093\/bioinformatics\/bts273","type":"journal-article","created":{"date-parts":[[2012,5,11]],"date-time":"2012-05-11T00:28:30Z","timestamp":1336696110000},"page":"1947-1948","source":"Crossref","is-referenced-by-count":18,"title":["MicrobeDB: a locally maintainable database of microbial genomic sequences"],"prefix":"10.1093","volume":"28","author":[{"given":"Morgan G. I.","family":"Langille","sequence":"first","affiliation":[{"name":"1 Department of Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, 2Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, 3BCCDC Public Health Microbiology & Reference Laboratory, Vancouver, British Columbia, Canada and 4Genome Center, University of California Davis, Davis, California, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Matthew R.","family":"Laird","sequence":"additional","affiliation":[{"name":"1 Department of Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, 2Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, 3BCCDC Public Health Microbiology & Reference Laboratory, Vancouver, British Columbia, Canada and 4Genome Center, University of California Davis, Davis, California, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"William W. L.","family":"Hsiao","sequence":"additional","affiliation":[{"name":"1 Department of Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, 2Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, 3BCCDC Public Health Microbiology & Reference Laboratory, Vancouver, British Columbia, Canada and 4Genome Center, University of California Davis, Davis, California, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Terry A.","family":"Chiu","sequence":"additional","affiliation":[{"name":"1 Department of Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, 2Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, 3BCCDC Public Health Microbiology & Reference Laboratory, Vancouver, British Columbia, Canada and 4Genome Center, University of California Davis, Davis, California, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jonathan A.","family":"Eisen","sequence":"additional","affiliation":[{"name":"1 Department of Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, 2Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, 3BCCDC Public Health Microbiology & Reference Laboratory, Vancouver, British Columbia, Canada and 4Genome Center, University of California Davis, Davis, California, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fiona S. 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