{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,13]],"date-time":"2026-06-13T12:22:53Z","timestamp":1781353373337,"version":"3.54.1"},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"14","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,7,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: The large and growing number of genome-wide datasets highlights the need for high-performance feature analysis and data comparison methods, in addition to efficient data storage and retrieval techniques. We introduce BEDOPS, a software suite for common genomic analysis tasks which offers improved flexibility, scalability and execution time characteristics over previously published packages. The suite includes a utility to compress large inputs into a lossless format that can provide greater space savings and faster data extractions than alternatives.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/code.google.com\/p\/bedops\/ includes binaries, source and documentation.<\/jats:p>\n               <jats:p>Contact: \u00a0sjn@u.washington.edu and jstam@u.washington.edu<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/bts277","type":"journal-article","created":{"date-parts":[[2012,5,11]],"date-time":"2012-05-11T00:28:30Z","timestamp":1336696110000},"page":"1919-1920","source":"Crossref","is-referenced-by-count":1027,"title":["BEDOPS: high-performance genomic feature operations"],"prefix":"10.1093","volume":"28","author":[{"given":"Shane","family":"Neph","sequence":"first","affiliation":[{"name":"1 Department of Genome Sciences and 2Department of Medicine, University of Washington, Seattle, Washington, DC 98195, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"M. Scott","family":"Kuehn","sequence":"additional","affiliation":[{"name":"1 Department of Genome Sciences and 2Department of Medicine, University of Washington, Seattle, Washington, DC 98195, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alex P.","family":"Reynolds","sequence":"additional","affiliation":[{"name":"1 Department of Genome Sciences and 2Department of Medicine, University of Washington, Seattle, Washington, DC 98195, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Eric","family":"Haugen","sequence":"additional","affiliation":[{"name":"1 Department of Genome Sciences and 2Department of Medicine, University of Washington, Seattle, Washington, DC 98195, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Robert E.","family":"Thurman","sequence":"additional","affiliation":[{"name":"1 Department of Genome Sciences and 2Department of Medicine, University of Washington, Seattle, Washington, DC 98195, 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