{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,25]],"date-time":"2026-02-25T23:51:55Z","timestamp":1772063515510,"version":"3.50.1"},"reference-count":15,"publisher":"Oxford University Press (OUP)","issue":"17","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,9,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: The exponential growth of scientific literature has resulted in a massive amount of unstructured natural language data that cannot be directly handled by means of bioinformatics tools. Such tools generally require structured data, often generated through a cumbersome process of manual literature curation. Herein, we present MyMiner, a free and user-friendly text annotation tool aimed to assist in carrying out the main biocuration tasks and to provide labelled data for the development of text mining systems. MyMiner allows easy classification and labelling of textual data according to user-specified classes as well as predefined biological entities. The usefulness and efficiency of this application have been tested for a range of real-life annotation scenarios of various research topics.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/myminer.armi.monash.edu.au.<\/jats:p>\n               <jats:p>Contacts: david.salgado@monash.edu and christophe.marcelle@monash.edu<\/jats:p>\n               <jats:p>Supplementary Information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/bts435","type":"journal-article","created":{"date-parts":[[2012,7,13]],"date-time":"2012-07-13T20:44:25Z","timestamp":1342212265000},"page":"2285-2287","source":"Crossref","is-referenced-by-count":41,"title":["MyMiner: a web application for computer-assisted biocuration and text annotation"],"prefix":"10.1093","volume":"28","author":[{"given":"David","family":"Salgado","sequence":"first","affiliation":[{"name":"1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C\/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS\/UI\/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Martin","family":"Krallinger","sequence":"additional","affiliation":[{"name":"1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C\/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS\/UI\/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marc","family":"Depaule","sequence":"additional","affiliation":[{"name":"1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C\/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS\/UI\/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Elodie","family":"Drula","sequence":"additional","affiliation":[{"name":"1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C\/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS\/UI\/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ashish V.","family":"Tendulkar","sequence":"additional","affiliation":[{"name":"1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C\/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS\/UI\/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Florian","family":"Leitner","sequence":"additional","affiliation":[{"name":"1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C\/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS\/UI\/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alfonso","family":"Valencia","sequence":"additional","affiliation":[{"name":"1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C\/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS\/UI\/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute of Technology (IIT), Madras, Chennai 600 036, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Christophe","family":"Marcelle","sequence":"additional","affiliation":[{"name":"1 Australian Regenerative Medicine Institute (ARMI), Monash University, Clayton, Victoria 3800, Australia, 2Structural Biology and BioComputing Programme, Spanish National Cancer Research Centre (CNIO), C\/ Melchor Fern\u00e1ndez Almagro, 3, E-28029 Madrid, Spain, 3Developmental Biology Institute of Marseille Luminy (IBDML), CNRS UMR 6216, Universit\u00e9 de la M\u00e9diterran\u00e9e, Campus de Luminy, 13288 Marseille Cedex 09, France, 4AFMB, UMR 6098 CNRS\/UI\/UII, Case 932, 13288 Marseille Cedex 9, France and 5Department of Computer Science and Engineering, Indian Institute 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