{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,13]],"date-time":"2026-01-13T03:57:34Z","timestamp":1768276654240,"version":"3.49.0"},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"18","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,9,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: The size and complex nature of mass spectrometry-based proteomics datasets motivate development of specialized software for statistical data analysis and exploration. We present DanteR, a graphical R package that features extensive statistical and diagnostic functions for quantitative proteomics data analysis, including normalization, imputation, hypothesis testing, interactive visualization and peptide-to-protein rollup. More importantly, users can easily extend the existing functionality by including their own algorithms under the Add-On tab.<\/jats:p>\n               <jats:p>Availability: DanteR and its associated user guide are available for download free of charge at http:\/\/omics.pnl.gov\/software\/. We have an updated binary source for the DanteR package up on our website together with a vignettes document. For Windows, a single click automatically installs DanteR along with the R programming environment. For Linux and Mac OS X, users must install R and then follow instructions on the DanteR website for package installation.<\/jats:p>\n               <jats:p>Contact: \u00a0rds@pnnl.gov<\/jats:p>","DOI":"10.1093\/bioinformatics\/bts449","type":"journal-article","created":{"date-parts":[[2012,7,20]],"date-time":"2012-07-20T10:12:51Z","timestamp":1342779171000},"page":"2404-2406","source":"Crossref","is-referenced-by-count":124,"title":["DanteR: an extensible R-based tool for quantitative analysis of -omics data"],"prefix":"10.1093","volume":"28","author":[{"given":"Tom","family":"Taverner","sequence":"first","affiliation":[{"name":"1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yuliya V.","family":"Karpievitch","sequence":"additional","affiliation":[{"name":"1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA"},{"name":"1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ashoka D.","family":"Polpitiya","sequence":"additional","affiliation":[{"name":"1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Joseph N.","family":"Brown","sequence":"additional","affiliation":[{"name":"1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alan R.","family":"Dabney","sequence":"additional","affiliation":[{"name":"1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. 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Fifth Avenue, Phoenix, AZ 85004, 4Department of Statistics, Texas A & M University, College Station, TX 77843-3143, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Richard D.","family":"Smith","sequence":"additional","affiliation":[{"name":"1 Biological Sciences Division, Pacific Northwest National Laboratory, 999 Battelle Boulevard, Richland, WA 99352, 2School of Mathematics and Physics, University of Tasmania, 1 Churchill Avenue, Hobart, Tasmania 7001, Australia, 3Center for Proteomics, Translational Genomics Research Institute, 445 N. 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