{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,8]],"date-time":"2026-01-08T04:47:55Z","timestamp":1767847675694,"version":"3.49.0"},"reference-count":13,"publisher":"Oxford University Press (OUP)","issue":"19","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,10,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: While there are numerous programs that can predict RNA or DNA secondary structures, a program that predicts RNA\/DNA hetero-dimers is still missing. The lack of easy to use tools for predicting their structure may be in part responsible for the small number of reports of biologically relevant RNA\/DNA hetero-dimers.<\/jats:p>\n               <jats:p>Results: We present here an extension to the widely used ViennaRNAPackage (Lorenz et al., 2011) for the prediction of the structure of RNA\/DNA hetero-dimers.<\/jats:p>\n               <jats:p>Availability: http:\/\/www.tbi.univie.ac.at\/~ronny\/RNA\/vrna2.html<\/jats:p>\n               <jats:p>Contact: ronny@tbi.univie.ac.at, berni@bioinf.uni-leipzig.de<\/jats:p>\n               <jats:p>Supplementary Information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/bts466","type":"journal-article","created":{"date-parts":[[2012,7,25]],"date-time":"2012-07-25T04:49:56Z","timestamp":1343191796000},"page":"2530-2531","source":"Crossref","is-referenced-by-count":22,"title":["Folding RNA\/DNA hybrid duplexes"],"prefix":"10.1093","volume":"28","author":[{"given":"Ronny","family":"Lorenz","sequence":"first","affiliation":[{"name":"1 Institute for Theoretical Chemistry, University of Vienna, 2Research group BCB, Faculty of Computer Science, University of Vienna, W\u00e4hringer Stra\u00dfe 17, 1090 Vienna, Austria and 3Department of Bioinformatics, University of Leipzig, Haertelstra\u00dfe 16-18, 04109 Leipzig, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ivo L.","family":"Hofacker","sequence":"additional","affiliation":[{"name":"1 Institute for Theoretical Chemistry, University of Vienna, 2Research group BCB, Faculty of Computer Science, University of Vienna, W\u00e4hringer Stra\u00dfe 17, 1090 Vienna, Austria and 3Department of Bioinformatics, University of Leipzig, Haertelstra\u00dfe 16-18, 04109 Leipzig, Germany"},{"name":"1 Institute for Theoretical Chemistry, University of Vienna, 2Research group BCB, Faculty of Computer Science, University of Vienna, W\u00e4hringer Stra\u00dfe 17, 1090 Vienna, Austria and 3Department of Bioinformatics, University of Leipzig, Haertelstra\u00dfe 16-18, 04109 Leipzig, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Stephan H.","family":"Bernhart","sequence":"additional","affiliation":[{"name":"1 Institute for Theoretical Chemistry, University of Vienna, 2Research group BCB, Faculty of Computer Science, University of Vienna, W\u00e4hringer Stra\u00dfe 17, 1090 Vienna, Austria and 3Department of Bioinformatics, University of Leipzig, Haertelstra\u00dfe 16-18, 04109 Leipzig, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2012,7,24]]},"reference":[{"key":"2023012513143753900_bts466-B1","doi-asserted-by":"crossref","first-page":"3","DOI":"10.1186\/1748-7188-1-3","article-title":"Partition function and base pairing probabilities of RNA heterodimers","volume":"1","author":"Bernhart","year":"2006","journal-title":"Algorithms Mol. 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