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XiP allows the construction of workflows by linking components written in both R and Java, the analysis of high-throughput data in grid engine systems and also the development of customized pipelines that can be encapsulated in a package and distributed. XiP already comes with several ready-to-use pipeline flows for the most common genomic and transcriptomic analysis and \u223c300 computational components.<\/jats:p><jats:p>Availability: XiP is open source, freely available under the Lesser General Public License (LGPL) and can be downloaded from http:\/\/xip.hgc.jp.<\/jats:p><jats:p>Contact: \u00a0nagasaki@megabank.tohoku.ac.jp<\/jats:p>","DOI":"10.1093\/bioinformatics\/bts630","type":"journal-article","created":{"date-parts":[[2012,10,27]],"date-time":"2012-10-27T00:18:50Z","timestamp":1351297130000},"page":"137-139","source":"Crossref","is-referenced-by-count":4,"title":["XiP: a computational environment to create, extend and share workflows"],"prefix":"10.1093","volume":"29","author":[{"given":"Masao","family":"Nagasaki","sequence":"first","affiliation":[{"name":"1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Andr\u00e9","family":"Fujita","sequence":"additional","affiliation":[{"name":"1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yayoi","family":"Sekiya","sequence":"additional","affiliation":[{"name":"1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ayumu","family":"Saito","sequence":"additional","affiliation":[{"name":"1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Emi","family":"Ikeda","sequence":"additional","affiliation":[{"name":"1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Chen","family":"Li","sequence":"additional","affiliation":[{"name":"1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Satoru","family":"Miyano","sequence":"additional","affiliation":[{"name":"1 Department of Integrative Genomics, Tohoku Medical Megabank Organization, Tohoku University, Japan, 2Department of Computer Science, Institute of Mathematics and Statistics, University of S\u00e3o Paulo, Brazil and 3Human Genome Center, Institute of Medical Science, University of Tokyo, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2012,10,25]]},"reference":[{"key":"2023020303202271900_bts630-B1","first-page":"423","article-title":"Kepler: an extensible system for design and execution of scientific workflows","volume-title":"Proceedings of the 16th International Conference on Scientific and Statistical Database Management","author":"Altintas","year":"2004"},{"key":"2023020303202271900_bts630-B2","first-page":"131","article-title":"Pegasus: mapping scientific workflows onto the grid","volume":"3165","author":"Deelman","year":"2004","journal-title":"Lect. 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