{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,6]],"date-time":"2026-05-06T08:10:45Z","timestamp":1778055045880,"version":"3.51.4"},"reference-count":4,"publisher":"Oxford University Press (OUP)","issue":"4","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,2,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: KEGG pathway database is a collection of manually drawn pathway maps accompanied with KGML format files intended for use in automatic analysis. KGML files, however, do not contain the required information for complete reproduction of all the events indicated in the static image of a pathway map. Several parsers and editors of KEGG pathways exist for processing KGML files. We introduce KEGGParser\u2014a MATLAB based tool for KEGG pathway parsing, semiautomatic fixing, editing, visualization and analysis in MATLAB environment. It also works with Scilab.<\/jats:p>\n               <jats:p>Availability and implementation: The source code is available at http:\/\/www.mathworks.com\/matlabcentral\/fileexchange\/37561.<\/jats:p>\n               <jats:p>Contact: \u00a0aarakelyan@sci.am<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/bts730","type":"journal-article","created":{"date-parts":[[2013,1,5]],"date-time":"2013-01-05T01:14:19Z","timestamp":1357348459000},"page":"518-519","source":"Crossref","is-referenced-by-count":30,"title":["KEGGParser: parsing and editing KEGG pathway maps in Matlab"],"prefix":"10.1093","volume":"29","author":[{"given":"Arsen","family":"Arakelyan","sequence":"first","affiliation":[{"name":"Group of Bioinformatics, Institute of Molecular Biology, National Academy of Sciences of the Republic of Armenia, Yerevan 0014, Armenia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lilit","family":"Nersisyan","sequence":"additional","affiliation":[{"name":"Group of Bioinformatics, Institute of Molecular Biology, National Academy of Sciences of the Republic of Armenia, Yerevan 0014, Armenia"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2013,1,3]]},"reference":[{"key":"2023012810252038500_bts730-B1","doi-asserted-by":"crossref","first-page":"D355","DOI":"10.1093\/nar\/gkp896","article-title":"KEGG for representation and analysis of molecular networks involving diseases and drugs","volume":"38","author":"Kanehisa","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"2023012810252038500_bts730-B2","doi-asserted-by":"crossref","first-page":"344","DOI":"10.1093\/bioinformatics\/btl611","article-title":"Dynamic exploration and editing of KEGG pathway diagrams","volume":"23","author":"Klukas","year":"2007","journal-title":"Bioinformatics"},{"key":"2023012810252038500_bts730-B3","doi-asserted-by":"crossref","first-page":"2314","DOI":"10.1093\/bioinformatics\/btr377","article-title":"KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats","volume":"27","author":"Wrzodek","year":"2011","journal-title":"Bioinformatics"},{"key":"2023012810252038500_bts730-B4","doi-asserted-by":"crossref","first-page":"1470","DOI":"10.1093\/bioinformatics\/btp167","article-title":"KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor","volume":"25","author":"Zhang","year":"2009","journal-title":"Bioinformatics"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/29\/4\/518\/48897729\/bioinformatics_29_4_518.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/29\/4\/518\/48897729\/bioinformatics_29_4_518.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,28]],"date-time":"2023-01-28T10:25:32Z","timestamp":1674901532000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/29\/4\/518\/200267"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2013,1,3]]},"references-count":4,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2013,2,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/bts730","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2013,2,15]]},"published":{"date-parts":[[2013,1,3]]}}}