{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,17]],"date-time":"2026-08-17T23:14:35Z","timestamp":1787008475149,"version":"build-2736575974"},"reference-count":18,"publisher":"Oxford University Press (OUP)","issue":"5","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1355,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,3,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Summary: The CluePedia Cytoscape plugin is a search tool for new markers potentially associated to pathways. CluePedia calculates linear and non-linear statistical dependencies from experimental data. Genes, proteins and miRNAs can be connected based on in silico and\/or experimental information and integrated into a ClueGO network of terms\/pathways. Interrelations within each pathway can be investigated, and new potential associations may be revealed through gene\/protein\/miRNA enrichments. A pathway-like visualization can be created using the Cerebral plugin layout. Combining all these features is essential for data interpretation and the generation of new hypotheses. The CluePedia Cytoscape plugin is user-friendly and has an expressive and intuitive visualization.<\/jats:p>\n                  <jats:p>Availability: http:\/\/www.ici.upmc.fr\/cluepedia\/ and via the Cytoscape plugin manager. The user manual is available at the CluePedia website.<\/jats:p>\n                  <jats:p>Contact: bernhard.mlecnik@crc.jussieu.fr or jerome.galon@crc.jussieu.fr<\/jats:p>\n                  <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt019","type":"journal-article","created":{"date-parts":[[2013,1,17]],"date-time":"2013-01-17T02:02:12Z","timestamp":1358388132000},"page":"661-663","source":"Crossref","is-referenced-by-count":955,"title":["CluePedia Cytoscape plugin: pathway insights using integrated experimental and\n                    <i>in silico<\/i>\n                    data"],"prefix":"10.1093","volume":"29","author":[{"given":"Gabriela","family":"Bindea","sequence":"first","affiliation":[{"name":"1 INSERM, Laboratory of Integrative Cancer Immunology, 75006 Paris, 2Cordeliers Research Center, Universit\u00e9 Paris Descartes, 75006 Paris and 3Cordeliers Research Center, Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, 75005 Paris, France"},{"name":"1 INSERM, Laboratory of Integrative Cancer Immunology, 75006 Paris, 2Cordeliers Research Center, Universit\u00e9 Paris Descartes, 75006 Paris and 3Cordeliers Research Center, Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, 75005 Paris, France"},{"name":"1 INSERM, Laboratory of Integrative Cancer Immunology, 75006 Paris, 2Cordeliers Research Center, Universit\u00e9 Paris Descartes, 75006 Paris and 3Cordeliers Research Center, Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, 75005 Paris, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J\u00e9r\u00f4me","family":"Galon","sequence":"additional","affiliation":[{"name":"1 INSERM, Laboratory of Integrative Cancer Immunology, 75006 Paris, 2Cordeliers Research Center, Universit\u00e9 Paris Descartes, 75006 Paris and 3Cordeliers Research Center, Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, 75005 Paris, France"},{"name":"1 INSERM, Laboratory of Integrative Cancer Immunology, 75006 Paris, 2Cordeliers Research Center, Universit\u00e9 Paris Descartes, 75006 Paris and 3Cordeliers Research Center, Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, 75005 Paris, France"},{"name":"1 INSERM, Laboratory of Integrative Cancer Immunology, 75006 Paris, 2Cordeliers Research Center, Universit\u00e9 Paris Descartes, 75006 Paris and 3Cordeliers Research Center, Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, 75005 Paris, France"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Bernhard","family":"Mlecnik","sequence":"additional","affiliation":[{"name":"1 INSERM, Laboratory of Integrative Cancer Immunology, 75006 Paris, 2Cordeliers Research Center, Universit\u00e9 Paris Descartes, 75006 Paris and 3Cordeliers Research Center, Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, 75005 Paris, France"},{"name":"1 INSERM, Laboratory of Integrative Cancer Immunology, 75006 Paris, 2Cordeliers Research Center, Universit\u00e9 Paris Descartes, 75006 Paris and 3Cordeliers Research Center, Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, 75005 Paris, France"},{"name":"1 INSERM, Laboratory of Integrative Cancer Immunology, 75006 Paris, 2Cordeliers Research Center, Universit\u00e9 Paris Descartes, 75006 Paris and 3Cordeliers Research Center, Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, 75005 Paris, France"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2013,1,16]]},"reference":[{"key":"2023051607331127300_btt019-B1","doi-asserted-by":"crossref","first-page":"387","DOI":"10.1186\/1471-2105-7-387","article-title":"On the statistical assessment of classifiers using DNA microarray data","volume":"7","author":"Ancona","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"2023051607331127300_btt019-B2","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","article-title":"Gene ontology: tool for the unification of biology The Gene Ontology Consortium","volume":"25","author":"Ashburner","year":"2000","journal-title":"Nat. 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