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The source code is made available under the GNU Lesser General Public License at https:\/\/github.com\/SimTk\/msmexplorer.<\/jats:p>\n               <jats:p>Contact: \u00a0pande@stanford.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt051","type":"journal-article","created":{"date-parts":[[2013,1,31]],"date-time":"2013-01-31T04:26:55Z","timestamp":1359606415000},"page":"950-952","source":"Crossref","is-referenced-by-count":24,"title":["MSMExplorer: visualizing Markov state models for biomolecule folding simulations"],"prefix":"10.1093","volume":"29","author":[{"given":"Bryce","family":"Cronkite-Ratcliff","sequence":"first","affiliation":[{"name":"1 Department of Computer Science, 2Department of Chemistry and 3Department of Structural Biology, Stanford University, Stanford, CA 94305, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Vijay","family":"Pande","sequence":"additional","affiliation":[{"name":"1 Department of Computer Science, 2Department of Chemistry and 3Department of Structural Biology, Stanford University, Stanford, CA 94305, USA"},{"name":"1 Department of Computer Science, 2Department of Chemistry and 3Department of Structural Biology, Stanford University, Stanford, CA 94305, USA"},{"name":"1 Department of Computer Science, 2Department of Chemistry and 3Department of Structural Biology, Stanford University, Stanford, CA 94305, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2013,1,30]]},"reference":[{"key":"2023020303310228700_btt051-B1","doi-asserted-by":"crossref","DOI":"10.1609\/icwsm.v3i1.13937","article-title":"Gephi: an open source software for exploring and manipulating networks","volume-title":"International AAAI Conference on Weblogs and Social Media","author":"Bastian","year":"2009"},{"key":"2023020303310228700_btt051-B2","doi-asserted-by":"crossref","first-page":"197","DOI":"10.1016\/j.ymeth.2009.04.013","article-title":"Using generalized ensemble simulations and Markov state models to identify conformational states","volume":"49","author":"Bowman","year":"2009","journal-title":"Methods"},{"key":"2023020303310228700_btt051-B3","doi-asserted-by":"crossref","first-page":"269","DOI":"10.1007\/BF01386390","article-title":"A note on two problems in connexion with graphs","volume":"1","author":"Dijkstra","year":"1959","journal-title":"Numerische Mathematik"},{"key":"2023020303310228700_btt051-B4","doi-asserted-by":"crossref","first-page":"391","DOI":"10.1146\/annurev.physchem.040808.090412","article-title":"Transition-path theory and path-finding algorithms for the study of rare events","volume":"61","author":"E","year":"2010","journal-title":"Annu. 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