{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,26]],"date-time":"2026-03-26T03:15:53Z","timestamp":1774494953378,"version":"3.50.1"},"reference-count":13,"publisher":"Oxford University Press (OUP)","issue":"8","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,4,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: A large number of proteins function as homo-oligomers; therefore, predicting homo-oligomeric structure of proteins is of primary importance for understanding protein function at the molecular level. Here, we introduce a web server for prediction of protein homo-oligomer structure. The server takes a protein monomer structure as input and predicts its homo-oligomer structure from oligomer templates selected based on sequence and tertiary\/quaternary structure similarity. Using protein model structures as input, the server shows clear improvement over the best methods of CASP9 in predicting oligomeric structures from amino acid sequences.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/galaxy.seoklab.org\/gemini.<\/jats:p>\n               <jats:p>Contact: \u00a0chaok@snu.ac.kr<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt079","type":"journal-article","created":{"date-parts":[[2013,2,15]],"date-time":"2013-02-15T04:03:00Z","timestamp":1360900980000},"page":"1078-1080","source":"Crossref","is-referenced-by-count":39,"title":["GalaxyGemini: a web server for protein homo-oligomer structure prediction based on similarity"],"prefix":"10.1093","volume":"29","author":[{"given":"Hasup","family":"Lee","sequence":"first","affiliation":[{"name":"Department of Chemistry, Seoul National University, Seoul 151-747, Republic of Korea"}]},{"given":"Hahnbeom","family":"Park","sequence":"additional","affiliation":[{"name":"Department of Chemistry, Seoul National University, Seoul 151-747, Republic of Korea"}]},{"given":"Junsu","family":"Ko","sequence":"additional","affiliation":[{"name":"Department of Chemistry, Seoul National University, Seoul 151-747, Republic of Korea"}]},{"given":"Chaok","family":"Seok","sequence":"additional","affiliation":[{"name":"Department of Chemistry, Seoul National University, Seoul 151-747, Republic of Korea"}]}],"member":"286","published-online":{"date-parts":[[2013,2,14]]},"reference":[{"key":"2023012810290705000_btt079-B1","doi-asserted-by":"crossref","first-page":"190","DOI":"10.1110\/ps.03323604","article-title":"Are protein\u2013protein interfaces more conserved in sequence than the rest of the protein surface?","volume":"13","author":"Caffrey","year":"2004","journal-title":"Protein Sci."},{"key":"2023012810290705000_btt079-B2","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1016\/0092-8674(95)90404-2","article-title":"Dimerization of cell surface receptors in signal transduction","volume":"80","author":"Heldin","year":"1995","journal-title":"Cell"},{"key":"2023012810290705000_btt079-B3","doi-asserted-by":"crossref","first-page":"10915","DOI":"10.1073\/pnas.89.22.10915","article-title":"Amino acid substitution matrices from protein blocks","volume":"89","author":"Henikoff","year":"1992","journal-title":"Proc. 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