{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,8,4]],"date-time":"2024-08-04T23:43:13Z","timestamp":1722814993104},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"8","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,4,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: We have developed Nozzle, an R package that provides an Application Programming Interface to generate HTML reports with dynamic user interface elements. Nozzle was designed to facilitate summarization and rapid browsing of complex results in data analysis pipelines where multiple analyses are performed frequently on big datasets. The package can be applied to any project where user-friendly reports need to be created.<\/jats:p>\n               <jats:p>Availability: The R package is available on CRAN at http:\/\/cran.r-project.org\/package=Nozzle.R1. Examples and additional materials are available at http:\/\/gdac.broadinstitute.org\/nozzle. The source code is also available at http:\/\/www.github.com\/parklab\/Nozzle.<\/jats:p>\n               <jats:p>Contact: \u00a0peter_park@hms.harvard.edu<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt085","type":"journal-article","created":{"date-parts":[[2013,2,19]],"date-time":"2013-02-19T12:32:56Z","timestamp":1361277176000},"page":"1089-1091","source":"Crossref","is-referenced-by-count":18,"title":["Nozzle: a report generation toolkit for data analysis pipelines"],"prefix":"10.1093","volume":"29","author":[{"given":"Nils","family":"Gehlenborg","sequence":"first","affiliation":[{"name":"1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA"},{"name":"1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael S.","family":"Noble","sequence":"additional","affiliation":[{"name":"1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gad","family":"Getz","sequence":"additional","affiliation":[{"name":"1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lynda","family":"Chin","sequence":"additional","affiliation":[{"name":"1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA"},{"name":"1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Peter J.","family":"Park","sequence":"additional","affiliation":[{"name":"1 Center for Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA, 2Cancer Program, Broad Institute, Cambridge, MA 02142, USA and 3Department of Genomic Medicine, MD Anderson Cancer Center, Houston, TX 77230, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2013,2,17]]},"reference":[{"key":"2023012810291807300_btt085-B1","doi-asserted-by":"crossref","first-page":"R86","DOI":"10.1186\/gb-2010-11-8-r86","article-title":"Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences","volume":"11","author":"Goecks","year":"2010","journal-title":"Genome Biol."},{"key":"2023012810291807300_btt085-B2","doi-asserted-by":"crossref","first-page":"W729","DOI":"10.1093\/nar\/gkl320","article-title":"Taverna: a tool for building and running workflows of services","volume":"34","author":"Hull","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"2023012810291807300_btt085-B3","first-page":"33","article-title":"The R2HTML Package","volume":"3","author":"Lecoutre","year":"2003","journal-title":"R News"},{"key":"2023012810291807300_btt085-B4","first-page":"575","article-title":"Sweave: dynamic generation of statistical reports using literate data analysis","volume-title":"Compstat 2002\u2014Proceedings in Computational Statistics","author":"Leisch","year":"2002"},{"key":"2023012810291807300_btt085-B5","doi-asserted-by":"crossref","first-page":"R41","DOI":"10.1186\/gb-2011-12-4-r41","article-title":"GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers","volume":"12","author":"Mermel","year":"2011","journal-title":"Genome Biol."},{"key":"2023012810291807300_btt085-B6","doi-asserted-by":"crossref","first-page":"500","DOI":"10.1038\/ng0506-500","article-title":"GenePattern 2.0","volume":"38","author":"Reich","year":"2006","journal-title":"Nat. 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