{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,14]],"date-time":"2026-04-14T22:57:08Z","timestamp":1776207428819,"version":"3.50.1"},"reference-count":15,"publisher":"Oxford University Press (OUP)","issue":"11","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,6,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Gene duplication occurs via different modes such as segmental and single-gene duplications. Transposed gene duplication, a specific form of single-gene duplication, \u2018copies\u2019 a gene from an ancestral chromosomal location to a novel location. MCScanX is a toolkit for detection and evolutionary analysis of gene colinearity. We have developed MCScanX-transposed, a software package to detect transposed gene duplications that occurred within different epochs, based on execution of MCScanX within and between related genomes. MCScanX-transposed can be also used for integrative analysis of gene duplication modes for a genome and to annotate a gene family of interest with gene duplication modes.<\/jats:p>\n               <jats:p>Availability: \u00a0MCScanX-transposed is freely available at http:\/\/chibba.pgml.uga.edu\/mcscan2\/transposed\/.<\/jats:p>\n               <jats:p>Contact: \u00a0wyp1125@gmail.com or paterson@plantbio.uga.edu<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt150","type":"journal-article","created":{"date-parts":[[2013,3,29]],"date-time":"2013-03-29T03:31:53Z","timestamp":1364527913000},"page":"1458-1460","source":"Crossref","is-referenced-by-count":181,"title":["<i>MCScanX-transposed<\/i>: detecting transposed gene duplications based on multiple colinearity scans"],"prefix":"10.1093","volume":"29","author":[{"given":"Yupeng","family":"Wang","sequence":"first","affiliation":[{"name":"1 Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602 and 2Computational Biology Service Unit, Cornell University, Ithaca, NY 14853, USA"},{"name":"1 Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602 and 2Computational Biology Service Unit, Cornell University, Ithaca, NY 14853, USA"}]},{"given":"Jingping","family":"Li","sequence":"additional","affiliation":[{"name":"1 Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602 and 2Computational Biology Service Unit, Cornell University, Ithaca, NY 14853, USA"}]},{"given":"Andrew H.","family":"Paterson","sequence":"additional","affiliation":[{"name":"1 Plant Genome Mapping Laboratory, University of Georgia, Athens, GA 30602 and 2Computational Biology Service Unit, Cornell University, Ithaca, NY 14853, USA"}]}],"member":"286","published-online":{"date-parts":[[2013,3,28]]},"reference":[{"key":"2023062610153518100_btt150-B1","doi-asserted-by":"crossref","first-page":"601","DOI":"10.1126\/science.1203877","article-title":"Evidence for network evolution in an Arabidopsis interactome map","volume":"333","author":"Arabidopsis Interactome Mapping Consortium","year":"2011","journal-title":"Science"},{"key":"2023062610153518100_btt150-B2","doi-asserted-by":"crossref","first-page":"673","DOI":"10.1016\/j.tig.2005.09.009","article-title":"Chromosome evolution in eukaryotes: a multi-kingdom perspective","volume":"21","author":"Coghlan","year":"2005","journal-title":"Trends Genet."},{"key":"2023062610153518100_btt150-B3","doi-asserted-by":"crossref","first-page":"679","DOI":"10.1093\/molbev\/msl199","article-title":"Not born equal: increased rate asymmetry in relocated and retrotransposed rodent gene duplicates","volume":"24","author":"Cusack","year":"2007","journal-title":"Mol. 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