{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,17]],"date-time":"2026-06-17T07:01:28Z","timestamp":1781679688113,"version":"3.54.5"},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"14","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1216,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,7,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Pathview is a novel tool set for pathway-based data integration and visualization. It maps and renders user data on relevant pathway graphs. Users only need to supply their data and specify the target pathway. Pathview automatically downloads the pathway graph data, parses the data file, maps and integrates user data onto the pathway and renders pathway graphs with the mapped data. Although built as a stand-alone program, Pathview may seamlessly integrate with pathway and functional analysis tools for large-scale and fully automated analysis pipelines.<\/jats:p>\n               <jats:p>Availability: The package is freely available under the GPLv3 license through Bioconductor and R-Forge. It is available at http:\/\/bioconductor.org\/packages\/release\/bioc\/html\/pathview.html and at http:\/\/Pathview.r-forge.r-project.org\/.<\/jats:p>\n               <jats:p>Contact: \u00a0luo_weijun@yahoo.com<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt285","type":"journal-article","created":{"date-parts":[[2013,6,6]],"date-time":"2013-06-06T00:44:12Z","timestamp":1370479452000},"page":"1830-1831","source":"Crossref","is-referenced-by-count":2086,"title":["Pathview: an R\/Bioconductor package for pathway-based data integration and visualization"],"prefix":"10.1093","volume":"29","author":[{"given":"Weijun","family":"Luo","sequence":"first","affiliation":[{"name":"1 Department of Bioinformatics and Genomics, UNC Charlotte, Charlotte, NC 28223 and 2UNC Charlotte Department of Bioinformatics and Genomics, North Carolina Research Campus, Kannapolis, NC 28081, USA"},{"name":"1 Department of Bioinformatics and Genomics, UNC Charlotte, Charlotte, NC 28223 and 2UNC Charlotte Department of Bioinformatics and Genomics, North Carolina Research Campus, Kannapolis, NC 28081, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Cory","family":"Brouwer","sequence":"additional","affiliation":[{"name":"1 Department of Bioinformatics and Genomics, UNC Charlotte, Charlotte, NC 28223 and 2UNC Charlotte Department of Bioinformatics and Genomics, North Carolina Research Campus, Kannapolis, NC 28081, USA"},{"name":"1 Department of Bioinformatics and Genomics, UNC Charlotte, Charlotte, NC 28223 and 2UNC Charlotte Department of Bioinformatics and Genomics, North Carolina Research Campus, Kannapolis, NC 28081, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2013,6,4]]},"reference":[{"key":"2023012810453513100_btt285-B1","doi-asserted-by":"crossref","first-page":"D691","DOI":"10.1093\/nar\/gkq1018","article-title":"Reactome: a database of reactions, pathways and biological processes","volume":"39","author":"Croft","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"2023012810453513100_btt285-B2","doi-asserted-by":"crossref","first-page":"483","DOI":"10.1007\/3-540-45848-4_57","article-title":"Graphviz\u2014open source graph drawing tools","volume-title":"Graph Drawing","author":"Ellson","year":"2002"},{"key":"2023012810453513100_btt285-B3","doi-asserted-by":"crossref","first-page":"e1002053","DOI":"10.1371\/journal.pcbi.1002053","article-title":"Pathway analysis of expression data: deciphering functional building blocks of complex diseases","volume":"7","author":"Emmert-Streib","year":"2011","journal-title":"PLoS Comput. 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