{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,31]],"date-time":"2025-10-31T14:08:23Z","timestamp":1761919703851},"reference-count":17,"publisher":"Oxford University Press (OUP)","issue":"15","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1227,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,8,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: RNA interference (RNAi) is known to play an important part in defence against viruses in a range of species. Second-generation sequencing technologies allow us to assay these systems and the small RNAs that play a key role with unprecedented depth. However, scientists need access to tools that can condense, analyse and display the resulting data. Here, we present viRome, a package for R that takes aligned sequence data and produces a range of essential plots and reports.<\/jats:p>\n               <jats:p>Availability and implementation: viRome is released under the BSD license as a package for R available for both Windows and Linux http:\/\/virome.sf.net. Additional information and a tutorial is available on the ARK-Genomics website: http:\/\/www.ark-genomics.org\/bioinformatics\/virome.<\/jats:p>\n               <jats:p>Contact: \u00a0mick.watson@roslin.ed.ac.uk<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt297","type":"journal-article","created":{"date-parts":[[2013,5,25]],"date-time":"2013-05-25T03:49:30Z","timestamp":1369453770000},"page":"1902-1903","source":"Crossref","is-referenced-by-count":42,"title":["viRome: an R package for the visualization and analysis of viral small RNA sequence datasets"],"prefix":"10.1093","volume":"29","author":[{"given":"Mick","family":"Watson","sequence":"first","affiliation":[{"name":"1 ARK-Genomics, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian EH25 9RG and 2MRC-University of Glasgow Centre for Virus Research, 8 Church Street, Glasgow G11 5JR, UK"}]},{"given":"Esther","family":"Schnettler","sequence":"additional","affiliation":[{"name":"1 ARK-Genomics, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian EH25 9RG and 2MRC-University of Glasgow Centre for Virus Research, 8 Church Street, Glasgow G11 5JR, UK"}]},{"given":"Alain","family":"Kohl","sequence":"additional","affiliation":[{"name":"1 ARK-Genomics, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian EH25 9RG and 2MRC-University of Glasgow Centre for Virus Research, 8 Church Street, Glasgow G11 5JR, UK"}]}],"member":"286","published-online":{"date-parts":[[2013,5,24]]},"reference":[{"key":"2023012810450681900_btt297-B1","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1007\/978-1-61779-037-9_7","article-title":"Visitor, an informatic pipeline for analysis of viral siRNA sequencing datasets","volume":"721","author":"Antoniewski","year":"2011","journal-title":"Methods Mol. 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