{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,15]],"date-time":"2024-09-15T20:52:29Z","timestamp":1726433549427},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"19","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,10,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Network-level visualization of functional data is a key aspect of both analysis and understanding of biological systems. In a continuing effort to create clear and integrated visualizations that facilitate the gathering of novel biological insights despite the overwhelming complexity of data, we present here the GrAph LANdscape VisualizaTion (GALANT), a Cytoscape plugin that builds functional landscapes onto biological networks. By using GALANT, it is possible to project any type of numerical data onto a network to create a smoothed data map resembling the network layout. As a Cytoscape plugin, GALANT is further improved by the functionalities of Cytoscape, the popular bioinformatics package for biological network visualization and data integration.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/www.lbbc.ibb.unesp.br\/galant.<\/jats:p>\n               <jats:p>Contact: \u00a0esther@ibb.unesp.br<\/jats:p>\n               <jats:p>Supplementary Information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt377","type":"journal-article","created":{"date-parts":[[2013,7,27]],"date-time":"2013-07-27T06:16:48Z","timestamp":1374905808000},"page":"2505-2506","source":"Crossref","is-referenced-by-count":5,"title":["GALANT: a Cytoscape plugin for visualizing data as functional landscapes projected onto biological networks"],"prefix":"10.1093","volume":"29","author":[{"given":"Esther","family":"Camilo","sequence":"first","affiliation":[{"name":"1 Department of Physics and Biophysics, Institute of Biosciences, UNESP Univ Estadual Paulista, Botucatu, S\u00e3o Paulo, Brazil and 2Institute of Basic Science and Health, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Luiz A.","family":"Bovolenta","sequence":"additional","affiliation":[{"name":"1 Department of Physics and Biophysics, Institute of Biosciences, UNESP Univ Estadual Paulista, Botucatu, S\u00e3o Paulo, Brazil and 2Institute of Basic Science and Health, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marcio L.","family":"Acencio","sequence":"additional","affiliation":[{"name":"1 Department of Physics and Biophysics, Institute of Biosciences, UNESP Univ Estadual Paulista, Botucatu, S\u00e3o Paulo, Brazil and 2Institute of Basic Science and Health, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jos\u00e9 L.","family":"Rybarczyk-Filho","sequence":"additional","affiliation":[{"name":"1 Department of Physics and Biophysics, Institute of Biosciences, UNESP Univ Estadual Paulista, Botucatu, S\u00e3o Paulo, Brazil and 2Institute of Basic Science and Health, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mauro A.A.","family":"Castro","sequence":"additional","affiliation":[{"name":"1 Department of Physics and Biophysics, Institute of Biosciences, UNESP Univ Estadual Paulista, Botucatu, S\u00e3o Paulo, Brazil and 2Institute of Basic Science and Health, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jos\u00e9 C.F.","family":"Moreira","sequence":"additional","affiliation":[{"name":"1 Department of Physics and Biophysics, Institute of Biosciences, UNESP Univ Estadual Paulista, Botucatu, S\u00e3o Paulo, Brazil and 2Institute of Basic Science and Health, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ney","family":"Lemke","sequence":"additional","affiliation":[{"name":"1 Department of Physics and Biophysics, Institute of Biosciences, UNESP Univ Estadual Paulista, Botucatu, S\u00e3o Paulo, Brazil and 2Institute of Basic Science and Health, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2013,7,26]]},"reference":[{"key":"2023012810465957600_btt377-B1","doi-asserted-by":"crossref","first-page":"282","DOI":"10.1093\/bioinformatics\/btm554","article-title":"Computing topological parameters of biological networks","volume":"24","author":"Assenov","year":"2008","journal-title":"Bioinformatics"},{"issue":"Suppl. 1","key":"2023012810465957600_btt377-B2","doi-asserted-by":"crossref","first-page":"D1005","DOI":"10.1093\/nar\/gkq1184","article-title":"NCBI GEO: archive for functional genomics data sets\u201310 years on","volume":"39","author":"Barrett","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"2023012810465957600_btt377-B3","doi-asserted-by":"crossref","first-page":"446","DOI":"10.1093\/bib\/bbr075","article-title":"Network biology methods integrating biological data for translational science","volume":"13","author":"Bebek","year":"2012","journal-title":"Brief. 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