{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,8,3]],"date-time":"2024-08-03T13:22:46Z","timestamp":1722691366503},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"21","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1148,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,11,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: High-quality draft genomes are now easy to generate, as sequencing and assembly costs have dropped dramatically. However, building a user-friendly searchable Web site and database for a newly annotated genome is not straightforward. Here we present Badger, a lightweight and easy-to-install genome exploration environment designed for next generation non-model organism genomes.<\/jats:p>\n               <jats:p>Availability: Badger is released under the GPL and is available at http:\/\/badger.bio.ed.ac.uk\/. We show two working examples: (i) a test dataset included with the source code, and (ii) a collection of four filarial nematode genomes.<\/jats:p>\n               <jats:p>Contact: mark.blaxter@ed.ac.uk<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt466","type":"journal-article","created":{"date-parts":[[2013,8,13]],"date-time":"2013-08-13T00:24:10Z","timestamp":1376353450000},"page":"2788-2789","source":"Crossref","is-referenced-by-count":8,"title":["Badger\u2014an accessible genome exploration environment"],"prefix":"10.1093","volume":"29","author":[{"given":"Ben","family":"Elsworth","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Martin","family":"Jones","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mark","family":"Blaxter","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2013,8,11]]},"reference":[{"key":"2023063011190106700_btt466-B1","doi-asserted-by":"crossref","first-page":"421","DOI":"10.1186\/1471-2105-10-421","article-title":"BLAST+: architecture and applications","volume":"10","author":"Camacho","year":"2009","journal-title":"BMC Bioinformatics"},{"key":"2023063011190106700_btt466-B2","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1186\/1471-2105-5-113","article-title":"MUSCLE: a multiple sequence alignment method with reduced time and space 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