{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,11]],"date-time":"2025-11-11T13:04:33Z","timestamp":1762866273358},"reference-count":24,"publisher":"Oxford University Press (OUP)","issue":"23","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,12,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: Advantages of statistical testing of high-throughput screens include P-values, which provide objective benchmarks of compound activity, and false discovery rate estimation. The cost of replication required for statistical testing, however, may often be prohibitive. We introduce the single assay-wide variance experimental (SAVE) design whereby a small replicated subset of an entire screen is used to derive empirical Bayes random error estimates, which are applied to the remaining majority of unreplicated measurements.<\/jats:p>\n               <jats:p>Results: The SAVE design is able to generate P-values comparable with those generated with full replication data. It performs almost as well as the random variance model t-test with duplicate data and outperforms the commonly used Z-scores with unreplicated data and the standard t-test. We illustrate the approach with simulated data and with experimental small molecule and small interfering RNA screens. The SAVE design provides substantial performance improvements over unreplicated screens with only slight increases in cost.<\/jats:p>\n               <jats:p>Contact: \u00a0robert.nadon@mcgill.ca<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt538","type":"journal-article","created":{"date-parts":[[2013,9,21]],"date-time":"2013-09-21T04:54:29Z","timestamp":1379739269000},"page":"3067-3072","source":"Crossref","is-referenced-by-count":7,"title":["Single assay-wide variance experimental (SAVE) design for high-throughput screening"],"prefix":"10.1093","volume":"29","author":[{"given":"Carl","family":"Murie","sequence":"first","affiliation":[{"name":"1 McGill University and Genome Quebec Innovation Centre, Montreal, Quebec H3A 0G1, Canada, 2McGill Department of Human Genetics, McGill University, Montreal, Quebec H3A 1B1, Canada, 3Equipe Criblage pour des Mol\u00e9cules Bio-Actives (CMBA), CEA Grenoble, Grenoble Cedex 09, France, 4INSERM, U823, 5Universit\u00e9 Joseph Fourier-Grenoble 1 and 6Institut Albert Bonniot, Grenoble F-38706, France"},{"name":"1 McGill University and Genome Quebec Innovation Centre, Montreal, Quebec H3A 0G1, Canada, 2McGill Department of Human Genetics, McGill University, Montreal, Quebec H3A 1B1, Canada, 3Equipe Criblage pour des Mol\u00e9cules Bio-Actives (CMBA), CEA Grenoble, Grenoble Cedex 09, France, 4INSERM, U823, 5Universit\u00e9 Joseph Fourier-Grenoble 1 and 6Institut Albert Bonniot, Grenoble F-38706, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Caroline","family":"Barette","sequence":"additional","affiliation":[{"name":"1 McGill University and Genome Quebec Innovation Centre, Montreal, Quebec H3A 0G1, Canada, 2McGill Department of Human Genetics, McGill University, Montreal, Quebec H3A 1B1, Canada, 3Equipe Criblage pour des Mol\u00e9cules Bio-Actives (CMBA), CEA Grenoble, Grenoble Cedex 09, France, 4INSERM, U823, 5Universit\u00e9 Joseph Fourier-Grenoble 1 and 6Institut Albert Bonniot, Grenoble F-38706, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Laurence","family":"Lafanech\u00e8re","sequence":"additional","affiliation":[{"name":"1 McGill University and Genome Quebec Innovation Centre, Montreal, Quebec H3A 0G1, Canada, 2McGill Department of Human Genetics, McGill University, Montreal, Quebec H3A 1B1, Canada, 3Equipe Criblage pour des Mol\u00e9cules Bio-Actives (CMBA), CEA Grenoble, Grenoble Cedex 09, France, 4INSERM, U823, 5Universit\u00e9 Joseph Fourier-Grenoble 1 and 6Institut Albert Bonniot, Grenoble F-38706, France"},{"name":"1 McGill University and Genome Quebec Innovation Centre, Montreal, Quebec H3A 0G1, Canada, 2McGill Department of Human Genetics, McGill University, Montreal, Quebec H3A 1B1, Canada, 3Equipe Criblage pour des Mol\u00e9cules Bio-Actives (CMBA), CEA Grenoble, Grenoble Cedex 09, France, 4INSERM, U823, 5Universit\u00e9 Joseph Fourier-Grenoble 1 and 6Institut Albert Bonniot, Grenoble F-38706, France"},{"name":"1 McGill University and Genome Quebec Innovation Centre, Montreal, Quebec H3A 0G1, Canada, 2McGill Department of Human Genetics, McGill University, Montreal, Quebec H3A 1B1, Canada, 3Equipe Criblage pour des Mol\u00e9cules Bio-Actives (CMBA), CEA Grenoble, Grenoble Cedex 09, France, 4INSERM, U823, 5Universit\u00e9 Joseph Fourier-Grenoble 1 and 6Institut Albert Bonniot, Grenoble F-38706, France"},{"name":"1 McGill University and Genome Quebec Innovation Centre, Montreal, Quebec H3A 0G1, Canada, 2McGill Department of Human Genetics, McGill University, Montreal, Quebec H3A 1B1, Canada, 3Equipe Criblage pour des Mol\u00e9cules Bio-Actives (CMBA), CEA Grenoble, Grenoble Cedex 09, France, 4INSERM, U823, 5Universit\u00e9 Joseph Fourier-Grenoble 1 and 6Institut Albert Bonniot, Grenoble F-38706, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Robert","family":"Nadon","sequence":"additional","affiliation":[{"name":"1 McGill University and Genome Quebec Innovation Centre, Montreal, Quebec H3A 0G1, Canada, 2McGill Department of Human Genetics, McGill University, Montreal, Quebec H3A 1B1, Canada, 3Equipe Criblage pour des Mol\u00e9cules Bio-Actives (CMBA), CEA Grenoble, Grenoble Cedex 09, France, 4INSERM, U823, 5Universit\u00e9 Joseph Fourier-Grenoble 1 and 6Institut Albert Bonniot, Grenoble F-38706, France"},{"name":"1 McGill University and Genome Quebec Innovation Centre, Montreal, Quebec H3A 0G1, Canada, 2McGill Department of Human Genetics, McGill University, Montreal, Quebec H3A 1B1, Canada, 3Equipe Criblage pour des Mol\u00e9cules Bio-Actives (CMBA), CEA Grenoble, Grenoble Cedex 09, France, 4INSERM, U823, 5Universit\u00e9 Joseph Fourier-Grenoble 1 and 6Institut Albert Bonniot, Grenoble F-38706, 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