{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,2,22]],"date-time":"2025-02-22T00:45:09Z","timestamp":1740185109226,"version":"3.37.3"},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"24","funder":[{"DOI":"10.13039\/100000002","name":"NIH","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,12,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: BlastGraph is an interactive Java program for comparative genome analysis based on Basic Local Alignment Search Tool (BLAST), graph clustering and data visualization. The software generates clusters of sequences of multiple genomes from all-to-all BLAST results and visualizes the results in graph plots together with related information such as sequence features, gene conservation and similarity relationships. Pruning algorithms are used to reduce results to more meaningful subclusters. Subsequent analyses can then be conducted based on the predicted clusters, including gene content, genome phylogenetics and gene gain and loss.<\/jats:p>\n               <jats:p>Availability and implementation: \u00a0https:\/\/github.com\/bigwiv\/BlastGraph.<\/jats:p>\n               <jats:p>Contact: \u00a0simon.rayner.cn@gmail.com<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt553","type":"journal-article","created":{"date-parts":[[2013,9,26]],"date-time":"2013-09-26T00:24:44Z","timestamp":1380155084000},"page":"3222-3224","source":"Crossref","is-referenced-by-count":9,"title":["BlastGraph: a comparative genomics tool based on BLAST and graph algorithms"],"prefix":"10.1093","volume":"29","author":[{"given":"Yanbo","family":"Ye","sequence":"first","affiliation":[{"name":"1 Key Laboratory of Agricultural and Environmental Microbiology, Wuhan Institute of Virology, Wuhan, Hubei, China, 430071, 2Graduate School of Chinese Academy of Sciences, Beijing, China and 3Exiqon A\/S, Vedbaek, Denmark"},{"name":"1 Key Laboratory of Agricultural and Environmental Microbiology, Wuhan Institute of Virology, Wuhan, Hubei, China, 430071, 2Graduate School of Chinese Academy of Sciences, Beijing, China and 3Exiqon A\/S, Vedbaek, Denmark"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bo","family":"Wei","sequence":"additional","affiliation":[{"name":"1 Key Laboratory of Agricultural and Environmental Microbiology, Wuhan Institute of Virology, Wuhan, Hubei, China, 430071, 2Graduate School of Chinese Academy of Sciences, Beijing, China and 3Exiqon A\/S, Vedbaek, Denmark"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lei","family":"Wen","sequence":"additional","affiliation":[{"name":"1 Key Laboratory of Agricultural and Environmental Microbiology, Wuhan Institute of Virology, Wuhan, Hubei, China, 430071, 2Graduate School of Chinese Academy of Sciences, Beijing, China and 3Exiqon A\/S, Vedbaek, Denmark"},{"name":"1 Key Laboratory of Agricultural and Environmental Microbiology, Wuhan Institute of Virology, Wuhan, Hubei, China, 430071, 2Graduate School of Chinese Academy of Sciences, Beijing, China and 3Exiqon A\/S, Vedbaek, Denmark"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Simon","family":"Rayner","sequence":"additional","affiliation":[{"name":"1 Key Laboratory of Agricultural and Environmental Microbiology, Wuhan Institute of Virology, Wuhan, Hubei, China, 430071, 2Graduate School of Chinese Academy of Sciences, Beijing, China and 3Exiqon A\/S, Vedbaek, Denmark"},{"name":"1 Key Laboratory of Agricultural and Environmental Microbiology, Wuhan Institute of Virology, Wuhan, Hubei, China, 430071, 2Graduate School of Chinese Academy of Sciences, Beijing, China and 3Exiqon A\/S, Vedbaek, Denmark"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2013,9,24]]},"reference":[{"key":"2023012810485192700_btt553-B1","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. 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