{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,5]],"date-time":"2026-04-05T08:20:35Z","timestamp":1775377235761,"version":"3.50.1"},"reference-count":19,"publisher":"Oxford University Press (OUP)","issue":"24","funder":[{"DOI":"10.13039\/100000002","name":"NIH","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2013,12,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Proteins can adopt a variety of conformations. We present a simple server for scoring the agreement between 3D atomic structures and experimental envelopes obtained by atomic force microscopy. Three different structures of immunoglobulins (IgG) or blood coagulation factor V activated were tested and their agreement with several topographical surfaces was computed. This approach can be used to test structural variability within a family of proteins.<\/jats:p>\n               <jats:p>Availability and implementation: DockAFM is available at http:\/\/biodev.cea.fr\/dockafm.<\/jats:p>\n               <jats:p>Contact: \u00a0chaves.rui.c@gmail.com or jlpellequer@cea.fr<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt561","type":"journal-article","created":{"date-parts":[[2013,9,28]],"date-time":"2013-09-28T03:43:59Z","timestamp":1380339839000},"page":"3230-3231","source":"Crossref","is-referenced-by-count":22,"title":["DockAFM: benchmarking protein structures by docking under AFM topographs"],"prefix":"10.1093","volume":"29","author":[{"given":"Rui C.","family":"Chaves","sequence":"first","affiliation":[{"name":"CEA, iBEB, Service de Biochimie et Toxicologie Nucl\u00e9aire, F-30207 Bagnols sur C\u00e8ze, France"}]},{"given":"Jean-Luc","family":"Pellequer","sequence":"additional","affiliation":[{"name":"CEA, iBEB, Service de Biochimie et Toxicologie Nucl\u00e9aire, F-30207 Bagnols sur C\u00e8ze, France"}]}],"member":"286","published-online":{"date-parts":[[2013,9,26]]},"reference":[{"key":"2023012810485331000_btt561-B1","doi-asserted-by":"crossref","first-page":"8918","DOI":"10.1073\/pnas.0403072101","article-title":"The crystal structure of activated protein C-inactivated bovine factor Va: implications for cofactor function","volume":"101","author":"Adams","year":"2004","journal-title":"Proc. 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