{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,27]],"date-time":"2026-03-27T13:52:39Z","timestamp":1774619559419,"version":"3.50.1"},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"1","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,1,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: We describe libSBMLReactionFinder, a C library for retrieving specific biochemical reactions from the curated systems biology markup language models contained in the BioModels database. The library leverages semantic annotations in the database to associate reactions with human-readable descriptions, making the reactions retrievable through simple string searches. Our goal is to provide a useful tool for quantitative modelers who seek to accelerate modeling efforts through the reuse of previously published representations of specific chemical reactions.<\/jats:p>\n               <jats:p>Availability and implementation: The library is open-source and dual licensed under the Mozilla Public License Version 2.0 and GNU General Public License Version 2.0. Project source code, downloads and documentation are available at http:\/\/code.google.com\/p\/lib-sbml-reaction-finder.<\/jats:p>\n               <jats:p>Contact: \u00a0mneal@uw.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt567","type":"journal-article","created":{"date-parts":[[2013,9,30]],"date-time":"2013-09-30T00:08:14Z","timestamp":1380499694000},"page":"129-130","source":"Crossref","is-referenced-by-count":5,"title":["A C library for retrieving specific reactions from the BioModels database"],"prefix":"10.1093","volume":"30","author":[{"given":"M. L.","family":"Neal","sequence":"first","affiliation":[{"name":"1 Department of Bioengineering, University of Washington, Seattle, WA 98195, USA and 2Department of Computer Science, Wofford College, Spartanburg, SC 29303, USA"}]},{"given":"M.","family":"Galdzicki","sequence":"additional","affiliation":[{"name":"1 Department of Bioengineering, University of Washington, Seattle, WA 98195, USA and 2Department of Computer Science, Wofford College, Spartanburg, SC 29303, USA"}]},{"given":"J. T.","family":"Gallimore","sequence":"additional","affiliation":[{"name":"1 Department of Bioengineering, University of Washington, Seattle, WA 98195, USA and 2Department of Computer Science, Wofford College, Spartanburg, SC 29303, USA"}]},{"given":"H. M.","family":"Sauro","sequence":"additional","affiliation":[{"name":"1 Department of Bioengineering, University of Washington, Seattle, WA 98195, USA and 2Department of Computer Science, Wofford College, Spartanburg, SC 29303, USA"}]}],"member":"286","published-online":{"date-parts":[[2013,9,29]]},"reference":[{"key":"2023012710375924800_btt567-B1","doi-asserted-by":"crossref","first-page":"880","DOI":"10.1093\/bioinformatics\/btn051","article-title":"LibSBML: an API library for SBML","volume":"24","author":"Bornstein","year":"2008","journal-title":"Bioinformatics"},{"key":"2023012710375924800_btt567-B2","doi-asserted-by":"crossref","first-page":"524","DOI":"10.1093\/bioinformatics\/btg015","article-title":"The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models","volume":"19","author":"Hucka","year":"2003","journal-title":"Bioinformatics"},{"key":"2023012710375924800_btt567-B3","doi-asserted-by":"crossref","first-page":"92","DOI":"10.1186\/1752-0509-4-92","article-title":"BioModels database: An enhanced, curated and annotated resource for published quantitative kinetic models","volume":"4","author":"Li","year":"2010","journal-title":"BMC Syst. 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