{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,26]],"date-time":"2026-01-26T19:17:34Z","timestamp":1769455054460,"version":"3.49.0"},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"5","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,3,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: The comparison of genes and gene products across species depends on high-quality tools to determine the relationships between gene or protein sequences from various species. Although some excellent applications are available and widely used, their performance leaves room for improvement.<\/jats:p>\n               <jats:p>Results: We developed orthAgogue: a multithreaded C application for high-speed estimation of homology relations in massive datasets, operated via a flexible and easy command-line interface.<\/jats:p>\n               <jats:p>Availability: The orthAgogue software is distributed under the GNU license. The source code and binaries compiled for Linux are available at https:\/\/code.google.com\/p\/orthagogue\/.<\/jats:p>\n               <jats:p>Contact: \u00a0orthagogue-issue-tracker@googlegroups.com<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt582","type":"journal-article","created":{"date-parts":[[2013,10,11]],"date-time":"2013-10-11T16:14:08Z","timestamp":1381508048000},"page":"734-736","source":"Crossref","is-referenced-by-count":96,"title":["orthAgogue: an agile tool for the rapid prediction of orthology relations"],"prefix":"10.1093","volume":"30","author":[{"given":"Ole Kristian","family":"Ekseth","sequence":"first","affiliation":[{"name":"Semantic Systems Biology Group, Department of Biology, Norwegian University of Science and Technology (NTNU), 7491 Trondheim, Norway"}]},{"given":"Martin","family":"Kuiper","sequence":"additional","affiliation":[{"name":"Semantic Systems Biology Group, Department of Biology, Norwegian University of Science and Technology (NTNU), 7491 Trondheim, Norway"}]},{"given":"Vladimir","family":"Mironov","sequence":"additional","affiliation":[{"name":"Semantic Systems Biology Group, Department of Biology, Norwegian University of Science and Technology (NTNU), 7491 Trondheim, Norway"}]}],"member":"286","published-online":{"date-parts":[[2013,10,9]]},"reference":[{"key":"2023012710425789600_btt582-B1","doi-asserted-by":"crossref","first-page":"259","DOI":"10.1007\/978-1-61779-582-4_9","article-title":"Inferring orthology and paralogy","volume-title":"Evolutionary Genomics","author":"Altenhoff","year":"2012"},{"key":"2023012710425789600_btt582-B2","doi-asserted-by":"crossref","first-page":"D289","DOI":"10.1093\/nar\/gkq1238","article-title":"Oma 2011: orthology inference among 1000 complete genomes","volume":"39","author":"Altenhoff","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"2023012710425789600_btt582-B3","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. 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