{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,12]],"date-time":"2025-12-12T13:24:35Z","timestamp":1765545875067},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"1","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,1,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: Although small nucleolar RNAs form an important class of non-coding RNAs, no comprehensive annotation efforts have been undertaken, presumably because the task is complicated by both the large number of distinct small nucleolar RNA families and their relatively rapid pace of sequence evolution.<\/jats:p>\n               <jats:p>Results: With snoStrip we present an automatic annotation pipeline developed specifically for comparative genomics of small nucleolar RNAs. It makes use of sequence conservation, canonical box motifs as well as secondary structure and predicts putative targets.<\/jats:p>\n               <jats:p>Availability and implementation: The snoStrip web service and the download version is available at http:\/\/snostrip.bioinf.uni-leipzig.de\/<\/jats:p>\n               <jats:p>Contact: \u00a0sebastian@bioinf.uni-leipzig.de<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt604","type":"journal-article","created":{"date-parts":[[2013,10,31]],"date-time":"2013-10-31T00:59:40Z","timestamp":1383181180000},"page":"115-116","source":"Crossref","is-referenced-by-count":25,"title":["<tt>snoStrip<\/tt>: a snoRNA annotation pipeline"],"prefix":"10.1093","volume":"30","author":[{"given":"Sebastian","family":"Bartschat","sequence":"first","affiliation":[{"name":"Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, Germany"}]},{"given":"Stephanie","family":"Kehr","sequence":"additional","affiliation":[{"name":"Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, Germany"}]},{"given":"Hakim","family":"Tafer","sequence":"additional","affiliation":[{"name":"Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, Germany"}]},{"given":"Peter F.","family":"Stadler","sequence":"additional","affiliation":[{"name":"Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, Germany"}]},{"given":"Jana","family":"Hertel","sequence":"additional","affiliation":[{"name":"Bioinformatics Group, Department of Computer Science, and Interdisciplinary Center for Bioinformatics, University of Leipzig, H\u00e4rtelstrasse 16-18, D-04107 Leipzig, Germany"}]}],"member":"286","published-online":{"date-parts":[[2013,10,29]]},"reference":[{"key":"2023012710380687100_btt604-B1","doi-asserted-by":"crossref","first-page":"775","DOI":"10.1016\/S0300-9084(02)01402-5","article-title":"The expanding snoRNA world","volume":"84","author":"Bachellerie","year":"2002","journal-title":"Biochimie"},{"key":"2023012710380687100_btt604-B2","doi-asserted-by":"crossref","first-page":"771","DOI":"10.1016\/j.jmb.2007.03.052","article-title":"Exploration of pairing constraints identifies a 9 base-pair core within box C\/D snoRNA-rRNA duplexes","volume":"369","author":"Chen","year":"2007","journal-title":"J. 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