{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,28]],"date-time":"2025-10-28T03:12:30Z","timestamp":1761621150186},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"6","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,3,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: pyGCluster is a clustering algorithm focusing on noise injection for subsequent cluster validation. The reproducibility of a large amount of clusters obtained with agglomerative hierarchical clustering is assessed. Furthermore, a multitude of different distance-linkage combinations are evaluated. Finally, highly reproducible clusters are meta-clustered into communities. Graphical illustration of the results as node and expression maps is implemented.<\/jats:p>\n               <jats:p>Availability and implementation: pyGCluster requires Python 2.7, it is freely available at http:\/\/pyGCluster.github.io and published under MIT license. Dependencies are NumPy, SciPy and optionally fastcluster and rpy2.<\/jats:p>\n               <jats:p>Contact: \u00a0christan@fufezan.net<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data is available at Bioinformatics online and at http:\/\/pyGCluster.github.io<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt626","type":"journal-article","created":{"date-parts":[[2013,11,1]],"date-time":"2013-11-01T06:53:15Z","timestamp":1383288795000},"page":"896-898","source":"Crossref","is-referenced-by-count":13,"title":["pyGCluster, a novel hierarchical clustering approach"],"prefix":"10.1093","volume":"30","author":[{"given":"Daniel","family":"Jaeger","sequence":"first","affiliation":[{"name":"Institute of Plant Biology and Biotechnology, Department of Biology, University of Muenster, M\u00fcnster 48143, Germany"}]},{"given":"Johannes","family":"Barth","sequence":"additional","affiliation":[{"name":"Institute of Plant Biology and Biotechnology, Department of Biology, University of Muenster, M\u00fcnster 48143, Germany"}]},{"given":"Anna","family":"Niehues","sequence":"additional","affiliation":[{"name":"Institute of Plant Biology and Biotechnology, Department of Biology, University of Muenster, M\u00fcnster 48143, Germany"}]},{"given":"Christian","family":"Fufezan","sequence":"additional","affiliation":[{"name":"Institute of Plant Biology and Biotechnology, Department of Biology, University of Muenster, M\u00fcnster 48143, Germany"}]}],"member":"286","published-online":{"date-parts":[[2013,10,31]]},"reference":[{"key":"2023012710445954400_btt626-B1","doi-asserted-by":"crossref","first-page":"682","DOI":"10.1093\/bioinformatics\/btn017","article-title":"Using repeated measurements to validate hierarchical gene clusters","volume":"24","author":"Br\u00e9h\u00e9lin","year":"2008","journal-title":"Bioinformatics"},{"key":"2023012710445954400_btt626-B2","doi-asserted-by":"crossref","first-page":"1203","DOI":"10.1002\/1097-024X(200009)30:11<1203::AID-SPE338>3.0.CO;2-N","article-title":"An open graph visualization system and its applications to software engineering","volume":"30","author":"Gansner","year":"2000","journal-title":"Softw. 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