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It provides pathway data retrieval and visualization and enables automatic creation of executable network models directly from qualitative connections between pathway nodes.<\/jats:p>\n               <jats:p>Availability and implementation:\u2003Available at Virtual Cell (http:\/\/vcell.org\/). Application runs on all major platforms and does not require registration for use on the user\u2019s computer. Tutorials and video are available at user guide page.<\/jats:p>\n               <jats:p>Contact:\u2003vcell_support@uchc.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btt660","type":"journal-article","created":{"date-parts":[[2013,11,23]],"date-time":"2013-11-23T03:29:55Z","timestamp":1385177395000},"page":"292-294","source":"Crossref","is-referenced-by-count":13,"title":["Pathway Commons at Virtual Cell: use of pathway data for mathematical modeling"],"prefix":"10.1093","volume":"30","author":[{"given":"Michael L.","family":"Blinov","sequence":"first","affiliation":[{"name":"Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA"}]},{"given":"James C.","family":"Schaff","sequence":"additional","affiliation":[{"name":"Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA"}]},{"given":"Oliver","family":"Ruebenacker","sequence":"additional","affiliation":[{"name":"Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA"}]},{"given":"Xintao","family":"Wei","sequence":"additional","affiliation":[{"name":"Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA"}]},{"given":"Dan","family":"Vasilescu","sequence":"additional","affiliation":[{"name":"Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA"}]},{"given":"Fei","family":"Gao","sequence":"additional","affiliation":[{"name":"Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA"}]},{"given":"Frank","family":"Morgan","sequence":"additional","affiliation":[{"name":"Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA"}]},{"given":"Li","family":"Ye","sequence":"additional","affiliation":[{"name":"Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA"}]},{"given":"Anuradha","family":"Lakshminarayana","sequence":"additional","affiliation":[{"name":"Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA"}]},{"given":"Ion I.","family":"Moraru","sequence":"additional","affiliation":[{"name":"Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA"}]},{"given":"Leslie M.","family":"Loew","sequence":"additional","affiliation":[{"name":"Center for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA"}]}],"member":"286","published-online":{"date-parts":[[2013,11,22]]},"reference":[{"key":"2023012710392423800_btt660-B1","doi-asserted-by":"crossref","first-page":"D685","DOI":"10.1093\/nar\/gkq1039","article-title":"Pathway Commons, a web resource for biological pathway data","volume":"39","author":"Cerami","year":"2011","journal-title":"Nucleic Acids Res."},{"key":"2023012710392423800_btt660-B2","doi-asserted-by":"crossref","first-page":"195","DOI":"10.1016\/B978-0-12-388403-9.00008-4","article-title":"Spatial modeling of cell signaling networks","volume":"110","author":"Cowan","year":"2012","journal-title":"Methods Cell Biol."},{"key":"2023012710392423800_btt660-B3","doi-asserted-by":"crossref","first-page":"935","DOI":"10.1038\/nbt.1666","article-title":"The BioPAX community standard for pathway data sharing","volume":"28","author":"Demir","year":"2010","journal-title":"Nat. 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