{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,23]],"date-time":"2026-07-23T20:15:05Z","timestamp":1784837705322,"version":"3.55.0"},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"9","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":993,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,5,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Pan-genome analyses have shed light on the dynamics and evolution of bacterial genome from the point of population. The explosive growth of bacterial genome sequence also brought an extremely big challenge to pan-genome profile analysis. We developed a tool, named PanGP, to complete pan-genome profile analysis for large-scale strains efficiently. PanGP has integrated two sampling algorithms, totally random (TR) and distance guide (DG). The DG algorithm drew sample strain combinations on the basis of genome diversity of bacterial population. The performance of these two algorithms have been evaluated on four bacteria populations with strain numbers varying from 30 to 200, and the DG algorithm exhibited overwhelming advantage on accuracy and stability than the TR algorithm.<\/jats:p>\n               <jats:p>Availability: PanGP was developed with a user-friendly graphic interface and it was available at http:\/\/PanGP.big.ac.cn.<\/jats:p>\n               <jats:p>Contact: \u00a0xiaojingfa@big.ac.cn or wujy@big.ac.cn<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btu017","type":"journal-article","created":{"date-parts":[[2014,1,14]],"date-time":"2014-01-14T04:29:24Z","timestamp":1389673764000},"page":"1297-1299","source":"Crossref","is-referenced-by-count":211,"title":["PanGP: A tool for quickly analyzing bacterial pan-genome profile"],"prefix":"10.1093","volume":"30","author":[{"given":"Yongbing","family":"Zhao","sequence":"first","affiliation":[{"name":"1 CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, People\u2019s Republic of China and 2University of Chinese Academy of Sciences, Beijing 100049, People\u2019s Republic of China"},{"name":"1 CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, People\u2019s Republic of China and 2University of Chinese Academy of Sciences, Beijing 100049, People\u2019s Republic of China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xinmiao","family":"Jia","sequence":"additional","affiliation":[{"name":"1 CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, People\u2019s Republic of China and 2University of Chinese Academy of Sciences, Beijing 100049, People\u2019s Republic of China"},{"name":"1 CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, People\u2019s Republic of China and 2University of Chinese Academy of Sciences, Beijing 100049, People\u2019s Republic of China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Junhui","family":"Yang","sequence":"additional","affiliation":[{"name":"1 CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, People\u2019s Republic of China and 2University of Chinese Academy of Sciences, Beijing 100049, People\u2019s Republic of China"},{"name":"1 CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, People\u2019s Republic of China and 2University of Chinese Academy of Sciences, Beijing 100049, People\u2019s Republic of China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yunchao","family":"Ling","sequence":"additional","affiliation":[{"name":"1 CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, People\u2019s Republic of China and 2University of Chinese Academy of Sciences, Beijing 100049, People\u2019s Republic of China"},{"name":"1 CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, People\u2019s Republic of China and 2University of Chinese Academy of Sciences, Beijing 100049, People\u2019s Republic of China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zhang","family":"Zhang","sequence":"additional","affiliation":[{"name":"1 CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, People\u2019s Republic of China and 2University of Chinese Academy of Sciences, Beijing 100049, People\u2019s Republic of China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jun","family":"Yu","sequence":"additional","affiliation":[{"name":"1 CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, People\u2019s Republic of China and 2University of Chinese Academy of Sciences, Beijing 100049, People\u2019s Republic of China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jiayan","family":"Wu","sequence":"additional","affiliation":[{"name":"1 CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, People\u2019s Republic of China and 2University of Chinese Academy of Sciences, Beijing 100049, People\u2019s Republic of China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jingfa","family":"Xiao","sequence":"additional","affiliation":[{"name":"1 CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, People\u2019s Republic of China and 2University of Chinese Academy of Sciences, Beijing 100049, People\u2019s Republic of China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2014,1,13]]},"reference":[{"key":"2023012710504433600_btu017-B1","doi-asserted-by":"crossref","first-page":"1567","DOI":"10.1214\/09-AAP657","article-title":"The diversity of a distributed genome in bacterial populations","volume":"20","author":"Baumdicker","year":"2010","journal-title":"Ann. 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