{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,3]],"date-time":"2026-03-03T15:30:14Z","timestamp":1772551814574,"version":"3.50.1"},"reference-count":4,"publisher":"Oxford University Press (OUP)","issue":"9","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":985,"URL":"http:\/\/creativecommons.org\/licenses\/by\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,5,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: The selection of models of nucleotide substitution is one of the major steps of modern phylogenetic analysis. Different tools exist to accomplish this task, among which jModelTest 2 (jMT2) is one of the most popular. Still, to deal with large DNA alignments with hundreds or thousands of loci, users of jMT2 need to have access to High Performance Computing clusters, including installation and configuration capabilities, conditions not always met. Here we present jmodeltest.org, a novel web server for the transparent execution of jMT2 across different platforms and for a wide range of users. Its main benefit is straightforward execution, avoiding any configuration\/execution issues, and reducing significantly in most cases the time required to complete the analysis.<\/jats:p>\n               <jats:p>Availability and implementation: \u00a0jmodeltest.org is accessible using modern browsers, such as Firefox, Chrome, Opera, Safari and IE from http:\/\/jmodeltest.org. User registration is not mandatory, but users wanting to have additional functionalities, like access to previous analyses, have the possibility of opening a user account.<\/jats:p>\n               <jats:p>Contact: \u00a0info@jmodeltest.org<\/jats:p>","DOI":"10.1093\/bioinformatics\/btu032","type":"journal-article","created":{"date-parts":[[2014,1,23]],"date-time":"2014-01-23T01:47:51Z","timestamp":1390441671000},"page":"1310-1311","source":"Crossref","is-referenced-by-count":84,"title":["<i>jmodeltest<\/i>.org: selection of nucleotide substitution models on the cloud"],"prefix":"10.1093","volume":"30","author":[{"given":"Jose Manuel","family":"Santorum","sequence":"first","affiliation":[{"name":"1 Department of Electronics and Systems, University of A Coru\u00f1a, 15071 A Coru\u00f1a and 2Department of Biochemistry, Genetics and Immunology, University of Vigo, 36201 Vigo, Spain"}]},{"given":"Diego","family":"Darriba","sequence":"additional","affiliation":[{"name":"1 Department of Electronics and Systems, University of A Coru\u00f1a, 15071 A Coru\u00f1a and 2Department of Biochemistry, Genetics and Immunology, University of Vigo, 36201 Vigo, Spain"},{"name":"1 Department of Electronics and Systems, University of A Coru\u00f1a, 15071 A Coru\u00f1a and 2Department of Biochemistry, Genetics and Immunology, University of Vigo, 36201 Vigo, Spain"}]},{"given":"Guillermo L.","family":"Taboada","sequence":"additional","affiliation":[{"name":"1 Department of Electronics and Systems, University of A Coru\u00f1a, 15071 A Coru\u00f1a and 2Department of Biochemistry, Genetics and Immunology, University of Vigo, 36201 Vigo, Spain"}]},{"given":"David","family":"Posada","sequence":"additional","affiliation":[{"name":"1 Department of Electronics and Systems, University of A Coru\u00f1a, 15071 A Coru\u00f1a and 2Department of Biochemistry, Genetics and Immunology, University of Vigo, 36201 Vigo, Spain"}]}],"member":"286","published-online":{"date-parts":[[2014,1,21]]},"reference":[{"key":"2023012710502463500_btu032-B1","doi-asserted-by":"crossref","first-page":"772","DOI":"10.1038\/nmeth.2109","article-title":"jModelTest 2: more models, new heuristics and parallel computing","volume":"9","author":"Darriba","year":"2012","journal-title":"Nat. Methods"},{"key":"2023012710502463500_btu032-B2","doi-asserted-by":"crossref","first-page":"696","DOI":"10.1080\/10635150390235520","article-title":"A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood","volume":"52","author":"Guindon","year":"2003","journal-title":"Syst. Biol."},{"key":"2023012710502463500_btu032-B3","doi-asserted-by":"crossref","first-page":"793","DOI":"10.1080\/10635150490522304","article-title":"Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests","volume":"53","author":"Posada","year":"2004","journal-title":"Syst. Biol."},{"key":"2023012710502463500_btu032-B4","doi-asserted-by":"crossref","first-page":"445","DOI":"10.1146\/annurev.ecolsys.36.102003.152633","article-title":"Model selection in phylogenetics","volume":"36","author":"Sullivan","year":"2005","journal-title":"Annu. Rev. Ecol., Evol. Syst."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/30\/9\/1310\/48922538\/bioinformatics_30_9_1310.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/30\/9\/1310\/48922538\/bioinformatics_30_9_1310.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,27]],"date-time":"2023-01-27T10:54:20Z","timestamp":1674816860000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/30\/9\/1310\/238030"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2014,1,21]]},"references-count":4,"journal-issue":{"issue":"9","published-print":{"date-parts":[[2014,5,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btu032","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2014,5,1]]},"published":{"date-parts":[[2014,1,21]]}}}