{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,13]],"date-time":"2026-05-13T01:06:44Z","timestamp":1778634404665,"version":"3.51.4"},"reference-count":16,"publisher":"Oxford University Press (OUP)","issue":"11","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,6,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: The studies of chromatin 3D structure help us to understand its formation and function. Techniques combining chromosome conformation capture and next generation sequencing can capture chromatin structure information and has been applied to several different species and cell lines. We built 3DGD (3D Genome Database), a database that currently collected Hi-C data on four species, for easy accessing and visualization of chromatin 3D structure data. With the integration of other omics data such as genome-wide protein\u2013DNA-binding data, this data source would be useful for researchers interested in chromatin structure and its biological functions.<\/jats:p>\n               <jats:p>Availability and implementation: The 3DGD v1.1, data browser, downloadable files and documentation are available at: http:\/\/3dgd.biosino.org\/.<\/jats:p>\n               <jats:p>Contact: \u00a0cwang@sibs.ac.cn; gwding@sibs.ac.cn; yxli@sibs.ac.cn<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btu081","type":"journal-article","created":{"date-parts":[[2014,2,14]],"date-time":"2014-02-14T03:19:10Z","timestamp":1392347950000},"page":"1640-1642","source":"Crossref","is-referenced-by-count":14,"title":["The 3DGD: a database of genome 3D structure"],"prefix":"10.1093","volume":"30","author":[{"given":"Chao","family":"Li","sequence":"first","affiliation":[{"name":"1 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, 2University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, 3National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and 4Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China"},{"name":"1 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, 2University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, 3National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and 4Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xiao","family":"Dong","sequence":"additional","affiliation":[{"name":"1 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. China, 2University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing 100049, 3National Center for Protein Science, Shanghai 333 Haike Road, Pudong District, Shanghai 201210 and 4Shanghai Center for Bioinformation Technology, 1278 Keyuan Road, Shanghai 201203, P. R. China"},{"name":"1 Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue Yang Road, Shanghai 200031, P. R. 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