{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,6]],"date-time":"2026-08-06T16:45:54Z","timestamp":1786034754051,"version":"3.56.0"},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"16","license":[{"start":{"date-parts":[[2016,12,28]],"date-time":"2016-12-28T00:00:00Z","timestamp":1482883200000},"content-version":"vor","delay-in-days":958,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,8,15]]},"abstract":"<jats:p>Summary: ThunderSTORM is an open-source, interactive and modular plug-in for ImageJ designed for automated processing, analysis and visualization of data acquired by single-molecule localization microscopy methods such as photo-activated localization microscopy and stochastic optical reconstruction microscopy. ThunderSTORM offers an extensive collection of processing and post-processing methods so that users can easily adapt the process of analysis to their data. ThunderSTORM also offers a set of tools for creation of simulated data and quantitative performance evaluation of localization algorithms using Monte Carlo simulations.<\/jats:p>\n               <jats:p>Availability and implementation: ThunderSTORM and the online documentation are both freely accessible at https:\/\/code.google.com\/p\/thunder-storm\/<\/jats:p>\n               <jats:p>Contact: \u00a0guy.hagen@lf1.cuni.cz<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary Data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btu202","type":"journal-article","created":{"date-parts":[[2014,4,26]],"date-time":"2014-04-26T04:03:50Z","timestamp":1398485030000},"page":"2389-2390","source":"Crossref","is-referenced-by-count":1549,"title":["ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging"],"prefix":"10.1093","volume":"30","author":[{"given":"Martin","family":"Ovesn\u00fd","sequence":"first","affiliation":[{"name":"1Institute of Cellular Biology and Pathology, First Faculty of Medicine, Charles University in Prague, Prague 12800, Czech Republic"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pavel","family":"K\u0159\u00ed\u017eek","sequence":"additional","affiliation":[{"name":"1Institute of Cellular Biology and Pathology, First Faculty of Medicine, Charles University in Prague, Prague 12800, Czech Republic"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Josef","family":"Borkovec","sequence":"additional","affiliation":[{"name":"1Institute of Cellular Biology and Pathology, First Faculty of Medicine, Charles University in Prague, Prague 12800, Czech Republic"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zden\u011bk","family":"\u0160vindrych","sequence":"additional","affiliation":[{"name":"1Institute of Cellular Biology and Pathology, First Faculty of Medicine, Charles University in Prague, Prague 12800, Czech Republic"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Guy M.","family":"Hagen","sequence":"additional","affiliation":[{"name":"1Institute of Cellular Biology and Pathology, First Faculty of Medicine, Charles University in Prague, Prague 12800, Czech Republic"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2014,5,15]]},"reference":[{"key":"2023012711522946000_btu202-B1","doi-asserted-by":"crossref","first-page":"1642","DOI":"10.1126\/science.1127344","article-title":"Imaging intracellular fluorescent proteins at nanometer resolution","volume":"313","author":"Betzig","year":"2006","journal-title":"Science"},{"key":"2023012711522946000_btu202-B2","doi-asserted-by":"crossref","first-page":"810","DOI":"10.1126\/science.1153529","article-title":"Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy","volume":"319","author":"Huang","year":"2008","journal-title":"Science"},{"key":"2023012711522946000_btu202-B3","doi-asserted-by":"crossref","first-page":"1377","DOI":"10.1364\/BOE.2.001377","article-title":"Simultaneous multiple-emitter fitting for single molecule super-resolution imaging","volume":"2","author":"Huang","year":"2011","journal-title":"Biomed. 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