{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,30]],"date-time":"2025-10-30T22:28:31Z","timestamp":1761863311865},"reference-count":11,"publisher":"Oxford University Press (OUP)","issue":"16","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,8,15]]},"abstract":"<jats:p>Summary: WebProt\u00e9g\u00e9 is an open-source Web application for editing OWL 2 ontologies. It contains several features to aid collaboration, including support for the discussion of issues, change notification and revision-based change tracking. WebProt\u00e9g\u00e9 also features a simple user interface, which is geared towards editing the kinds of class descriptions and annotations that are prevalent throughout biomedical ontologies. Moreover, it is possible to configure the user interface using views that are optimized for editing Open Biomedical Ontology (OBO) class descriptions and metadata. Some of these views are shown in the Supplementary Data and can be seen in WebProt\u00e9g\u00e9 itself by configuring the project as an OBO project.<\/jats:p>\n               <jats:p>Availability and implementation: WebProt\u00e9g\u00e9 is freely available for use on the Web at http:\/\/webprotege.stanford.edu. It is implemented in Java and JavaScript using the OWL API and the Google Web Toolkit. All major browsers are supported. For users who do not wish to host their ontologies on the Stanford servers, WebProt\u00e9g\u00e9 is available as a Web app that can be run locally using a Servlet container such as Tomcat. Binaries, source code and documentation are available under an open-source license at http:\/\/protegewiki.stanford.edu\/wiki\/WebProtege.<\/jats:p>\n               <jats:p>Contact: \u00a0matthew.horridge@stanford.edu<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary Data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btu256","type":"journal-article","created":{"date-parts":[[2014,4,27]],"date-time":"2014-04-27T00:45:19Z","timestamp":1398559519000},"page":"2384-2385","source":"Crossref","is-referenced-by-count":28,"title":["WebProt\u00e9g\u00e9: a collaborative Web-based platform for editing biomedical ontologies"],"prefix":"10.1093","volume":"30","author":[{"given":"Matthew","family":"Horridge","sequence":"first","affiliation":[{"name":"1Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA"}]},{"given":"Tania","family":"Tudorache","sequence":"additional","affiliation":[{"name":"1Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA"}]},{"given":"Csongor","family":"Nuylas","sequence":"additional","affiliation":[{"name":"1Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA"}]},{"given":"Jennifer","family":"Vendetti","sequence":"additional","affiliation":[{"name":"1Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA"}]},{"given":"Natalya F.","family":"Noy","sequence":"additional","affiliation":[{"name":"1Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA"}]},{"given":"Mark A.","family":"Musen","sequence":"additional","affiliation":[{"name":"1Stanford Center for Biomedical Informatics Research, Stanford University, 1265 Welch Road, Stanford, CA 94305, USA"}]}],"member":"286","published-online":{"date-parts":[[2014,4,26]]},"reference":[{"key":"2023012711523163200_btu256-B1","doi-asserted-by":"crossref","first-page":"2198","DOI":"10.1093\/bioinformatics\/btm112","article-title":"OBO-Edit\u2014an ontology editor for biologists","volume":"23","author":"Day-Richter","year":"2007","journal-title":"Bioinformatics"},{"key":"2023012711523163200_btu256-B2","article-title":"Ecco: a hybrid diff tool for OWL 2 ontologies","volume-title":"Proceedings of OWL: Experiences and Directions Workshop 2012","author":"Gon\u00e7alves","year":"2012"},{"key":"2023012711523163200_btu256-B3","article-title":"Supporting early adoption of OWL 1.1 with Prot\u00e9g\u00e9-OWL and FaCT++","volume-title":"OWL: Experiences and Directions (OWLED)","author":"Horridge","year":"2006"},{"key":"2023012711523163200_btu256-B4","doi-asserted-by":"crossref","first-page":"11","DOI":"10.3233\/SW-2011-0025","article-title":"The OWL API: a Java API for OWL ontologies","volume":"2","author":"Horridge","year":"2011","journal-title":"Semant. 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