{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,21]],"date-time":"2026-02-21T15:19:51Z","timestamp":1771687191377,"version":"3.50.1"},"reference-count":19,"publisher":"Oxford University Press (OUP)","issue":"21","license":[{"start":{"date-parts":[[2016,11,7]],"date-time":"2016-11-07T00:00:00Z","timestamp":1478476800000},"content-version":"vor","delay-in-days":832,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2014,11,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Circleator is a Perl application that generates circular figures of genome-associated data. It leverages BioPerl to support standard annotation and sequence file formats and produces publication-quality SVG output. It is designed to be both flexible and easy to use. It includes a library of circular track types and predefined configuration files for common use-cases, including. (i) visualizing gene annotation and DNA sequence data from a GenBank flat file, (ii) displaying patterns of gene conservation in related microbial strains, (iii) showing Single Nucleotide Polymorphisms (SNPs) and indels relative to a reference genome and gene set and (iv) viewing RNA-Seq plots.<\/jats:p>\n               <jats:p>Availability and implementation: Circleator is freely available under the Artistic License 2.0 from http:\/\/jonathancrabtree.github.io\/Circleator\/ and is integrated with the CloVR cloud-based sequence analysis Virtual Machine (VM), which can be downloaded from http:\/\/clovr.org or run on Amazon EC2.<\/jats:p>\n               <jats:p>Contact: \u00a0jcrabtree@som.umaryland.edu<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btu505","type":"journal-article","created":{"date-parts":[[2014,7,30]],"date-time":"2014-07-30T00:14:11Z","timestamp":1406679251000},"page":"3125-3127","source":"Crossref","is-referenced-by-count":36,"title":["Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG"],"prefix":"10.1093","volume":"30","author":[{"given":"Jonathan","family":"Crabtree","sequence":"first","affiliation":[{"name":"1 Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, 2 Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, 3 i3 Institute, University of Technology, Sydney, PO Box 123 Broadway NSW 2007, Australia, 4 Department of Microbial Pathogenesis, University of Maryland Dental School, Baltimore, MD 21201, 5 Center for Health-Related Informatics and Bioimaging, University of Maryland, College Park, MD 20740 and 6 Department of Epidemiology and Public Health, University of Maryland School of Medicine, Baltimore, MD 21201, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sonia","family":"Agrawal","sequence":"additional","affiliation":[{"name":"1 Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD 21201, 2 Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, 3 i3 Institute, University of Technology, Sydney, PO Box 123 Broadway NSW 2007, Australia, 4 Department of Microbial Pathogenesis, University of Maryland Dental School, Baltimore, MD 21201, 5 Center for Health-Related Informatics and Bioimaging, University of Maryland, College Park, MD 20740 and 6 Department of Epidemiology and Public Health, University of Maryland School of Medicine, Baltimore, MD 21201, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anup","family":"Mahurkar","sequence":"additional","affiliation":[{"name":"1 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