{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,7]],"date-time":"2026-06-07T01:48:10Z","timestamp":1780796890373,"version":"3.54.1"},"reference-count":16,"publisher":"Oxford University Press (OUP)","issue":"2","license":[{"start":{"date-parts":[[2016,11,3]],"date-time":"2016-11-03T00:00:00Z","timestamp":1478131200000},"content-version":"vor","delay-in-days":769,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2015,1,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: We have created a Shiny-based Web application, called Shiny-phyloseq , for dynamic interaction with microbiome data that runs on any modern Web browser and requires no programming, increasing the accessibility and decreasing the entrance requirement to using phyloseq and related R tools. Along with a data- and context-aware dynamic interface for exploring the effects of parameter and method choices, Shiny-phyloseq also records the complete user input and subsequent graphical results of a user\u2019s session, allowing the user to archive, share and reproduce the sequence of steps that created their result\u2014without writing any new code themselves.<\/jats:p>\n               <jats:p>Availability and implementation : Shiny-phyloseq is implemented entirely in the R language. It can be hosted\/launched by any system with R installed, including Windows, Mac OS and most Linux distributions. Information technology administrators can also host Shiny-phyloseq from a remote server, in which case users need only have a Web browser installed. Shiny-phyloseq is provided free of charge under a GPL-3 open-source license through GitHub at http:\/\/joey711.github.io\/shiny-phyloseq\/ .<\/jats:p>\n               <jats:p>Contact : mcmurdie@alumni.stanford.edu .<\/jats:p>","DOI":"10.1093\/bioinformatics\/btu616","type":"journal-article","created":{"date-parts":[[2014,9,28]],"date-time":"2014-09-28T00:25:27Z","timestamp":1411863927000},"page":"282-283","source":"Crossref","is-referenced-by-count":162,"title":["Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking"],"prefix":"10.1093","volume":"31","author":[{"given":"Paul J.","family":"McMurdie","sequence":"first","affiliation":[{"name":"Department of Statistics, Stanford University, Stanford, CA 94305, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Susan","family":"Holmes","sequence":"additional","affiliation":[{"name":"Department of Statistics, Stanford University, Stanford, CA 94305, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2014,9,26]]},"reference":[{"key":"2023020116155071800_btu616-B1","volume-title":"The Markdown Package: Markdown Rendering for R. 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