{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,23]],"date-time":"2026-04-23T11:15:40Z","timestamp":1776942940971,"version":"3.51.4"},"reference-count":37,"publisher":"Oxford University Press (OUP)","issue":"6","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2015,3,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: Over the last decades several glycomics-based bioinformatics resources and databases have been created and released to the public. Unfortunately, there is no common standard in the representation of the stored information or a common machine-readable interface allowing bioinformatics groups to easily extract and cross-reference the stored information.<\/jats:p>\n               <jats:p>Results: An international group of bioinformatics experts in the field of glycomics have worked together to create a standard Resource Description Framework (RDF) representation for glycomics data, focused on glycan sequences and related biological source, publications and experimental data. This RDF standard is defined by the GlycoRDF ontology and will be used by database providers to generate common machine-readable exports of the data stored in their databases.<\/jats:p>\n               <jats:p>Availability and implementation: The ontology, supporting documentation and source code used by database providers to generate standardized RDF are available online (http:\/\/www.glycoinfo.org\/GlycoRDF\/).<\/jats:p>\n               <jats:p>Contact: \u00a0rene@ccrc.uga.edu or kkiyoko@soka.ac.jp<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btu732","type":"journal-article","created":{"date-parts":[[2014,11,12]],"date-time":"2014-11-12T04:44:24Z","timestamp":1415767464000},"page":"919-925","source":"Crossref","is-referenced-by-count":52,"title":["GlycoRDF: an ontology to standardize glycomics data in RDF"],"prefix":"10.1093","volume":"31","author":[{"given":"Rene","family":"Ranzinger","sequence":"first","affiliation":[{"name":"1 Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, 2Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, 3Faculty of Engineering, Soka University, Tokyo, Japan, 4Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, 5Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, 6Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Giessen, Germany, 7Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, 8N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and 9Laboratory of Glyco-organic Chemistry, The Noguchi Institute, Tokyo, Japan"}]},{"given":"Kiyoko F.","family":"Aoki-Kinoshita","sequence":"additional","affiliation":[{"name":"1 Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, 2Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, 3Faculty of Engineering, Soka University, Tokyo, Japan, 4Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, 5Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, 6Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Giessen, Germany, 7Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, 8N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and 9Laboratory of Glyco-organic Chemistry, The Noguchi Institute, Tokyo, Japan"},{"name":"1 Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, 2Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, 3Faculty of Engineering, Soka University, Tokyo, Japan, 4Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, 5Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, 6Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Giessen, Germany, 7Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, 8N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and 9Laboratory of Glyco-organic Chemistry, The Noguchi Institute, Tokyo, Japan"}]},{"given":"Matthew P.","family":"Campbell","sequence":"additional","affiliation":[{"name":"1 Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, 2Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, 3Faculty of Engineering, Soka University, Tokyo, Japan, 4Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, 5Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, 6Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Giessen, Germany, 7Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, 8N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and 9Laboratory of Glyco-organic Chemistry, The Noguchi Institute, Tokyo, Japan"}]},{"given":"Shin","family":"Kawano","sequence":"additional","affiliation":[{"name":"1 Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, 2Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, 3Faculty of Engineering, Soka University, Tokyo, Japan, 4Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, 5Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, 6Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Giessen, Germany, 7Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, 8N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and 9Laboratory of Glyco-organic Chemistry, The Noguchi Institute, Tokyo, Japan"}]},{"given":"Thomas","family":"L\u00fctteke","sequence":"additional","affiliation":[{"name":"1 Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, 2Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, 3Faculty of Engineering, Soka University, Tokyo, Japan, 4Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, 5Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, 6Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Giessen, Germany, 7Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, 8N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and 9Laboratory of Glyco-organic Chemistry, The Noguchi Institute, Tokyo, Japan"}]},{"given":"Shujiro","family":"Okuda","sequence":"additional","affiliation":[{"name":"1 Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, 2Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, 3Faculty of Engineering, Soka University, Tokyo, Japan, 4Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, 5Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, 6Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Giessen, Germany, 7Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, 8N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and 9Laboratory of Glyco-organic Chemistry, The Noguchi Institute, Tokyo, Japan"}]},{"given":"Daisuke","family":"Shinmachi","sequence":"additional","affiliation":[{"name":"1 Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, 2Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, 3Faculty of Engineering, Soka University, Tokyo, Japan, 4Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, 5Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, 6Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Giessen, Germany, 7Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, 8N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and 9Laboratory of Glyco-organic Chemistry, The Noguchi Institute, Tokyo, Japan"}]},{"given":"Toshihide","family":"Shikanai","sequence":"additional","affiliation":[{"name":"1 Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, 2Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, 3Faculty of Engineering, Soka University, Tokyo, Japan, 4Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, 5Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, 6Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Giessen, Germany, 7Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, 8N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and 9Laboratory of Glyco-organic Chemistry, The Noguchi Institute, Tokyo, Japan"}]},{"given":"Hiromichi","family":"Sawaki","sequence":"additional","affiliation":[{"name":"1 Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, 2Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, 3Faculty of Engineering, Soka University, Tokyo, Japan, 4Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, 5Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, 6Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Giessen, Germany, 7Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, 8N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and 9Laboratory of Glyco-organic Chemistry, The Noguchi Institute, Tokyo, Japan"}]},{"given":"Philip","family":"Toukach","sequence":"additional","affiliation":[{"name":"1 Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, 2Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, 3Faculty of Engineering, Soka University, Tokyo, Japan, 4Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, 5Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, 6Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Giessen, Germany, 7Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, 8N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and 9Laboratory of Glyco-organic Chemistry, The Noguchi Institute, Tokyo, Japan"}]},{"given":"Masaaki","family":"Matsubara","sequence":"additional","affiliation":[{"name":"1 Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, 2Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, 3Faculty of Engineering, Soka University, Tokyo, Japan, 4Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, 5Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, 6Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Giessen, Germany, 7Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, 8N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and 9Laboratory of Glyco-organic Chemistry, The Noguchi Institute, Tokyo, Japan"}]},{"given":"Issaku","family":"Yamada","sequence":"additional","affiliation":[{"name":"1 Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, 2Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, 3Faculty of Engineering, Soka University, Tokyo, Japan, 4Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, 5Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, 6Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Giessen, Germany, 7Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, 8N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and 9Laboratory of Glyco-organic Chemistry, The Noguchi Institute, Tokyo, Japan"}]},{"given":"Hisashi","family":"Narimatsu","sequence":"additional","affiliation":[{"name":"1 Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA, 2Research Center for Medical Glycoscience, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan, 3Faculty of Engineering, Soka University, Tokyo, Japan, 4Biomolecular Frontiers Research Centre, Macquarie University, Sydney, Australia, 5Database Center for Life Science, Research Organization of Information and Systems, Chiba, Japan, 6Institute of Veterinary Physiology and Biochemistry, Justus-Liebig-University Giessen, Giessen, Germany, 7Graduate School of Medical and Dental Sciences, Niigata University, Niigata, Japan, 8N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Moscow, Russia and 9Laboratory of Glyco-organic Chemistry, The Noguchi Institute, Tokyo, Japan"}]}],"member":"286","published-online":{"date-parts":[[2014,11,11]]},"reference":[{"key":"2023020116191641300_btu732-B1","doi-asserted-by":"crossref","first-page":"39","DOI":"10.1186\/2041-1480-4-39","article-title":"Introducing glycomics data into the Semantic Web","volume":"4","author":"Aoki-Kinoshita","year":"2013","journal-title":"J. Biomed. 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