{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T06:53:17Z","timestamp":1769928797757,"version":"3.49.0"},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"10","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2015,5,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: Polyadenylation is an essential process during eukaryotic gene expression. Prediction of poly(A) sites helps to define the 3\u2032 end of genes, which is important for gene annotation and elucidating gene regulation mechanisms. However, due to limited knowledge of poly(A) signals, it is still challenging to predict poly(A) sites in plants and algae. PASPA is a web server for poly(A) site prediction in plants and algae, which integrates many in-house tools as add-ons to facilitate poly(A) site prediction, visualization and mining. This server can predict poly(A) sites for ten species, including seven previously poly(A) signal non-characterized species, with sensitivity and specificity in a range between 0.80 and 0.95.<\/jats:p>\n               <jats:p>Availability and implementation: \u00a0http:\/\/bmi.xmu.edu.cn\/paspa<\/jats:p>\n               <jats:p>Contact: xhuister@xmu.edu.cn<\/jats:p>\n               <jats:p>Supplementary information: Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btv004","type":"journal-article","created":{"date-parts":[[2015,1,13]],"date-time":"2015-01-13T01:15:54Z","timestamp":1421111754000},"page":"1671-1673","source":"Crossref","is-referenced-by-count":16,"title":["PASPA: a web server for mRNA poly(A) site predictions in plants and algae"],"prefix":"10.1093","volume":"31","author":[{"given":"Guoli","family":"Ji","sequence":"first","affiliation":[{"name":"1 Department of Automation, 2 Innovation Center for Cell Biology and 3Key Laboratory of the Ministry of Education on Costal Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, Fujian, China, 4Department of Biology, Miami University, Oxford, OH, USA and 5Rice Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian, China"},{"name":"1 Department of Automation, 2 Innovation Center for Cell Biology and 3Key Laboratory of the Ministry of Education on Costal Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, Fujian, China, 4Department of Biology, Miami University, Oxford, OH, USA and 5Rice Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lei","family":"Li","sequence":"additional","affiliation":[{"name":"1 Department of Automation, 2 Innovation Center for Cell Biology and 3Key Laboratory of the Ministry of Education on Costal Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, Fujian, China, 4Department of Biology, Miami University, Oxford, OH, USA and 5Rice Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Qingshun Q.","family":"Li","sequence":"additional","affiliation":[{"name":"1 Department of Automation, 2 Innovation Center for Cell Biology and 3Key Laboratory of the Ministry of Education on Costal Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, Fujian, China, 4Department of Biology, Miami University, Oxford, OH, USA and 5Rice Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian, China"},{"name":"1 Department of Automation, 2 Innovation Center for Cell Biology and 3Key Laboratory of the Ministry of Education on Costal Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, Fujian, China, 4Department of Biology, Miami University, Oxford, OH, USA and 5Rice Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian, China"},{"name":"1 Department of Automation, 2 Innovation Center for Cell Biology and 3Key Laboratory of the Ministry of Education on Costal Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, Fujian, China, 4Department of Biology, Miami University, Oxford, OH, USA and 5Rice Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xiangdong","family":"Wu","sequence":"additional","affiliation":[{"name":"1 Department of Automation, 2 Innovation Center for Cell Biology and 3Key Laboratory of the Ministry of Education on Costal Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, Fujian, China, 4Department of Biology, Miami University, Oxford, OH, USA and 5Rice Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jingyi","family":"Fu","sequence":"additional","affiliation":[{"name":"1 Department of Automation, 2 Innovation Center for Cell Biology and 3Key Laboratory of the Ministry of Education on Costal Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, Fujian, China, 4Department of Biology, Miami University, Oxford, OH, USA and 5Rice Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gong","family":"Chen","sequence":"additional","affiliation":[{"name":"1 Department of Automation, 2 Innovation Center for Cell Biology and 3Key Laboratory of the Ministry of Education on Costal Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, Fujian, China, 4Department of Biology, Miami University, Oxford, OH, USA and 5Rice Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian, China"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Xiaohui","family":"Wu","sequence":"additional","affiliation":[{"name":"1 Department of Automation, 2 Innovation Center for Cell Biology and 3Key Laboratory of the Ministry of Education on Costal Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, Fujian, China, 4Department of Biology, Miami University, Oxford, OH, USA and 5Rice Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, Fujian, China"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2015,1,11]]},"reference":[{"key":"2023020115445379700_btv004-B1","doi-asserted-by":"crossref","first-page":"646","DOI":"10.1186\/1471-2164-11-646","article-title":"POLYAR, a new computer program for prediction of poly(A) sites in human sequences","volume":"11","author":"Akhtar","year":"2010","journal-title":"BMC 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