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It downloads and indexes the needed databases, runs the analysis and produces human readable and standard outputs together with summary statistics of the whole analysis.<\/jats:p>\n               <jats:p>Availability and implementation: Annocript is distributed under the GNU General Public License (version 3 or later) and is freely available at https:\/\/github.com\/frankMusacchia\/Annocript.<\/jats:p>\n               <jats:p>Contact: \u00a0remo.sanges@szn.it<\/jats:p>","DOI":"10.1093\/bioinformatics\/btv106","type":"journal-article","created":{"date-parts":[[2015,2,21]],"date-time":"2015-02-21T15:10:09Z","timestamp":1424531409000},"page":"2199-2201","source":"Crossref","is-referenced-by-count":106,"title":["Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs"],"prefix":"10.1093","volume":"31","author":[{"given":"Francesco","family":"Musacchia","sequence":"first","affiliation":[{"name":"1 Biology and Evolution of Marine Organisms, Stazione Zoologica \u201cAnton Dohrn\u201d, Villa Comunale, 80121, Naples, Italy and 2Department of Biology, University of Naples Federico II, Via Mezzocannone 8, 80134, Naples, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Swaraj","family":"Basu","sequence":"additional","affiliation":[{"name":"1 Biology and Evolution of Marine Organisms, Stazione Zoologica \u201cAnton Dohrn\u201d, Villa Comunale, 80121, Naples, Italy and 2Department of Biology, University of Naples Federico II, Via Mezzocannone 8, 80134, Naples, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Giuseppe","family":"Petrosino","sequence":"additional","affiliation":[{"name":"1 Biology and Evolution of Marine Organisms, Stazione Zoologica \u201cAnton Dohrn\u201d, Villa Comunale, 80121, Naples, Italy and 2Department of Biology, University of Naples Federico II, Via Mezzocannone 8, 80134, Naples, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marco","family":"Salvemini","sequence":"additional","affiliation":[{"name":"1 Biology and Evolution of Marine Organisms, Stazione Zoologica \u201cAnton Dohrn\u201d, Villa Comunale, 80121, Naples, Italy and 2Department of Biology, University of Naples Federico II, Via Mezzocannone 8, 80134, Naples, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Remo","family":"Sanges","sequence":"additional","affiliation":[{"name":"1 Biology and Evolution of Marine Organisms, Stazione Zoologica \u201cAnton Dohrn\u201d, Villa Comunale, 80121, Naples, Italy and 2Department of Biology, University of Naples Federico II, Via Mezzocannone 8, 80134, Naples, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2015,2,19]]},"reference":[{"key":"2023020202133552000_btv106-B1","doi-asserted-by":"crossref","first-page":"239","DOI":"10.1186\/1471-2105-10-239","article-title":"Screening noncoding RNAs in transcriptomes from neglected species using PORTRAIT: case study of the pathogenic fungus Paracoccidioides brasiliensis","volume":"10","author":"Arrial","year":"2009","journal-title":"BMC Bioinformatics"},{"key":"2023020202133552000_btv106-B2","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","article-title":"Gene ontology: tool for the unification of biology. 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