{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,1,26]],"date-time":"2024-01-26T06:00:17Z","timestamp":1706248817691},"reference-count":13,"publisher":"Oxford University Press (OUP)","issue":"14","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2015,7,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Genome Wide Association Studies between molecular markers and phenotypes are now routinely run in model and non-model species. However, tools to estimate the probability of association of functional units (e.g. genes) containing multiple markers are not developed for species other than humans. Here we introduce MUGBAS (MUlti species Gene-Based Association Suite), software that estimates the P-value of a gene using information on annotation, single marker GWA results and genotype. The software is species and annotation independent, fast, highly parallelized and ready for high-density marker studies.<\/jats:p>\n               <jats:p>Availability and implementation: https:\/\/bitbucket.org\/capemaster\/mugbas<\/jats:p>\n               <jats:p>Contact: \u00a0capemaster@gmail.com<\/jats:p>","DOI":"10.1093\/bioinformatics\/btv144","type":"journal-article","created":{"date-parts":[[2015,3,13]],"date-time":"2015-03-13T00:41:57Z","timestamp":1426207317000},"page":"2380-2381","source":"Crossref","is-referenced-by-count":5,"title":["MUGBAS: a species free gene-based programme suite for post-GWAS analysis"],"prefix":"10.1093","volume":"31","author":[{"given":"S.","family":"Capomaccio","sequence":"first","affiliation":[{"name":"Istituto di Zootecnica, Universit\u00e0 Cattolica del Sacro Cuore, 29122, Piacenza, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"M.","family":"Milanesi","sequence":"additional","affiliation":[{"name":"Istituto di Zootecnica, Universit\u00e0 Cattolica del Sacro Cuore, 29122, Piacenza, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"L.","family":"Bomba","sequence":"additional","affiliation":[{"name":"Istituto di Zootecnica, Universit\u00e0 Cattolica del Sacro Cuore, 29122, Piacenza, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"E.","family":"Vajana","sequence":"additional","affiliation":[{"name":"Istituto di Zootecnica, Universit\u00e0 Cattolica del Sacro Cuore, 29122, Piacenza, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"P.","family":"Ajmone-Marsan","sequence":"additional","affiliation":[{"name":"Istituto di Zootecnica, Universit\u00e0 Cattolica del Sacro Cuore, 29122, Piacenza, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2015,3,11]]},"reference":[{"key":"2023020202154057100_btv144-B1","doi-asserted-by":"crossref","first-page":"e24220","DOI":"10.1371\/journal.pone.0024220","article-title":"A network-based approach to prioritize results from genome-wide association studies","volume":"6","author":"Akula","year":"2011","journal-title":"PLoS ONE"},{"key":"2023020202154057100_btv144-B2","article-title":"doParallel: Foreach parallel adaptor for the parallel package","author":"Analytics","year":"2014"},{"key":"2023020202154057100_btv144-B3","article-title":"foreach: Foreach looping construct for R","author":"Analytics","year":"2014"},{"key":"2023020202154057100_btv144-B4","doi-asserted-by":"crossref","first-page":"577","DOI":"10.1534\/genetics.107.075614","article-title":"Genomewide rapid association using mixed model and regression: a fast and simple method For genomewide pedigree-based quantitative trait loci association analysis","volume":"177","author":"Aulchenko","year":"2007","journal-title":"Genetics"},{"key":"2023020202154057100_btv144-B5","doi-asserted-by":"crossref","first-page":"6","DOI":"10.1016\/j.ajhg.2009.11.017","article-title":"Prioritizing GWAS results: a review of statistical methods and recommendations for their APPLICATION","volume":"86","author":"Cantor","year":"2010","journal-title":"Am. 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