{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,23]],"date-time":"2026-06-23T03:50:24Z","timestamp":1782186624132,"version":"3.54.5"},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"19","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2015,10,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>We introduce FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.<\/jats:p>\n                  <jats:p>Availability and implementation: The tool and data are available and will be maintained at http:\/\/kakitone.github.io\/finishingTool\/<\/jats:p>\n                  <jats:p>Contact: dntse@stanford.edu<\/jats:p>\n                  <jats:p>Supplementary information: Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btv280","type":"journal-article","created":{"date-parts":[[2015,6,4]],"date-time":"2015-06-04T06:15:43Z","timestamp":1433398543000},"page":"3207-3209","source":"Crossref","is-referenced-by-count":133,"title":["FinisherSC: a repeat-aware tool for upgrading\n                    <i>de novo<\/i>\n                    assembly using long reads"],"prefix":"10.1093","volume":"31","author":[{"given":"Ka-Kit","family":"Lam","sequence":"first","affiliation":[{"name":"1 Department of Electrical Engineering and Computer Sciences, UC Berkeley,"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Kurt","family":"LaButti","sequence":"additional","affiliation":[{"name":"2 U.S. Department of Energy Joint Genome Institute, Walnut Creek,"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Asif","family":"Khalak","sequence":"additional","affiliation":[{"name":"3 Pacific Biosciences, Menlo Park, and"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David","family":"Tse","sequence":"additional","affiliation":[{"name":"1 Department of Electrical Engineering and Computer Sciences, UC Berkeley,"},{"name":"4 Department of Electrical Engineering, Stanford University, Palo Alto, CA, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2015,6,3]]},"reference":[{"key":"2023020202303084800_btv280-B1","doi-asserted-by":"crossref","first-page":"563","DOI":"10.1038\/nmeth.2474","article-title":"Nonhybrid, finished microbial genome assemblies from long-read smrt sequencing data","volume":"10","author":"Chin","year":"2013","journal-title":"Nat. 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