{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,5]],"date-time":"2026-03-05T07:54:15Z","timestamp":1772697255628,"version":"3.50.1"},"reference-count":13,"publisher":"Oxford University Press (OUP)","issue":"17","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2015,9,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: Horizontal transfer of transposable (HTT) elements among eukaryotes was discovered in the mid-1980s. As then, &amp;gt;300 new cases have been described. New findings about HTT are revealing the evolutionary impact of this phenomenon on host genomes. In order to provide an up to date, interactive and expandable database for such events, we developed the HTT-DB database.<\/jats:p>\n               <jats:p>Results: HTT-DB allows easy access to most of HTT cases reported along with rich information about each case. Moreover, it allows the user to generate tables and graphs based on searches using Transposable elements and\/or host species classification and export them in several formats.<\/jats:p>\n               <jats:p>Availability and implementation: This database is freely available on the web at http:\/\/lpa.saogabriel.unipampa.edu.br:8080\/httdatabase. HTT-DB was developed based on Java and MySQL with all major browsers supported. Tools and software packages used are free for personal or non-profit projects.<\/jats:p>\n               <jats:p>Contact: \u00a0bdotto82@gmail.com or gabriel.wallau@gmail.com<\/jats:p>","DOI":"10.1093\/bioinformatics\/btv281","type":"journal-article","created":{"date-parts":[[2015,5,5]],"date-time":"2015-05-05T00:11:08Z","timestamp":1430784668000},"page":"2915-2917","source":"Crossref","is-referenced-by-count":57,"title":["HTT-DB: Horizontally transferred transposable elements database"],"prefix":"10.1093","volume":"31","author":[{"given":"Bruno Reis","family":"Dotto","sequence":"first","affiliation":[{"name":"1 Campus S\u00e3o Gabriel, Universidade Federal do Pampa, S\u00e3o Gabriel,"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Evelise Leis","family":"Carvalho","sequence":"additional","affiliation":[{"name":"2 P\u00f3s Gradua\u00e7\u00e3o em Ci\u00eancias Biol\u00f3gicas, Universidade Federal do Pampa, S\u00e3o Gabriel and"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alexandre Freitas","family":"Silva","sequence":"additional","affiliation":[{"name":"1 Campus S\u00e3o Gabriel, Universidade Federal do Pampa, S\u00e3o Gabriel,"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Luiz Fernando","family":"Duarte Silva","sequence":"additional","affiliation":[{"name":"1 Campus S\u00e3o Gabriel, Universidade Federal do Pampa, S\u00e3o Gabriel,"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Paulo Marcos","family":"Pinto","sequence":"additional","affiliation":[{"name":"1 Campus S\u00e3o Gabriel, Universidade Federal do Pampa, S\u00e3o Gabriel,"},{"name":"2 P\u00f3s Gradua\u00e7\u00e3o em Ci\u00eancias Biol\u00f3gicas, Universidade Federal do Pampa, S\u00e3o Gabriel and"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mauro Freitas","family":"Ortiz","sequence":"additional","affiliation":[{"name":"3 P\u00f3s Gradua\u00e7\u00e3o em Genetica e Biologia Molecular, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brasil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Gabriel Luz","family":"Wallau","sequence":"additional","affiliation":[{"name":"2 P\u00f3s Gradua\u00e7\u00e3o em Ci\u00eancias Biol\u00f3gicas, Universidade Federal do Pampa, S\u00e3o Gabriel and"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2015,5,4]]},"reference":[{"key":"2023020202221597800_btv281-B1","doi-asserted-by":"crossref","first-page":"128","DOI":"10.1038\/nrg1524","article-title":"The ecology of the genome\u2014mobile DNA elements and their hosts","volume":"6","author":"Brookfield","year":"2005","journal-title":"Nat. Rev. Genet."},{"key":"2023020202221597800_btv281-B2","doi-asserted-by":"crossref","first-page":"6794","DOI":"10.1073\/pnas.81.21.6794","article-title":"Sequences homologous to P elements occur in Drosophila paulistorum","volume":"81","author":"Daniels","year":"1984","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2023020202221597800_btv281-B3","doi-asserted-by":"crossref","first-page":"339","DOI":"10.1093\/genetics\/124.2.339","article-title":"Evidence for horizontal transmission of the P transposable element between Drosophila species","volume":"124","author":"Daniels","year":"1990","journal-title":"Genetics"},{"key":"2023020202221597800_btv281-B4","doi-asserted-by":"crossref","first-page":"e1000905","DOI":"10.1371\/journal.pgen.1000905","article-title":"Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila","volume":"6","author":"Gonz\u00e1les","year":"2010","journal-title":"PloS Genetics."},{"key":"2023020202221597800_btv281-B5","doi-asserted-by":"crossref","first-page":"19","DOI":"10.1186\/1745-6150-6-19","article-title":"The struggle for life of the genome\u2019s selfish architects","volume":"6","author":"Hua-Van","year":"2011","journal-title":"Biol. Direct"},{"key":"2023020202221597800_btv281-B6","doi-asserted-by":"crossref","first-page":"e1004560","DOI":"10.1371\/journal.pgen.1004560","article-title":"A transposable element insertion confers xenobiotic resistance in Drosophila","volume":"10","author":"Mateo","year":"2014","journal-title":"PloS Genetics."},{"key":"2023020202221597800_btv281-B7","doi-asserted-by":"crossref","first-page":"1633","DOI":"10.1093\/molbev\/msq337","article-title":"Population genomics of transposable elements in Drosophila melanogaster","volume":"28","author":"Petrov","year":"2011","journal-title":"Mol. Biol. Evol."},{"key":"2023020202221597800_btv281-B8","doi-asserted-by":"crossref","first-page":"648","DOI":"10.1093\/jhered\/esp065","article-title":"Transposable elements and factors influencing their success in eukaryotes","volume":"100","author":"Pritham","year":"2009","journal-title":"J. Hered."},{"key":"2023020202221597800_btv281-B9","doi-asserted-by":"crossref","first-page":"537","DOI":"10.1016\/j.tree.2010.06.001","article-title":"Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution","volume":"25","author":"Schaack","year":"2010","journal-title":"Trends Ecol. Evol."},{"key":"2023020202221597800_btv281-B10","first-page":"57","article-title":"Factors that affect the horizontal transfer of transposable elements","volume":"6","author":"Silva","year":"2004","journal-title":"Curr. Issues Mol. Biol."},{"key":"2023020202221597800_btv281-B11","doi-asserted-by":"crossref","first-page":"e12267","DOI":"10.1371\/journal.pone.0012267","article-title":"jsPhyloSVG: a Javascript library for visualizing interactive and vector-based phylogenetics trees on the web","volume":"5","author":"Smits","year":"2010","journal-title":"PloS One"},{"key":"2023020202221597800_btv281-B12","doi-asserted-by":"crossref","first-page":"689","DOI":"10.1093\/gbe\/evs055","article-title":"Horizontal transposon transfer in eukarya: detection, bias, and perspectives","volume":"4","author":"Wallau","year":"2012","journal-title":"Genome Biol. Evol."},{"key":"2023020202221597800_btv281-B13","doi-asserted-by":"crossref","first-page":"10863","DOI":"10.1073\/pnas.1102343108","article-title":"Selfish genetic elements, genetic conflict, and evolutionary innovation","volume":"108","author":"Werren","year":"2011","journal-title":"Proc. Natl. Acad. Sci. USA"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/31\/17\/2915\/49035844\/bioinformatics_31_17_2915.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/31\/17\/2915\/49035844\/bioinformatics_31_17_2915.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,2]],"date-time":"2023-02-02T03:46:30Z","timestamp":1675309590000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/31\/17\/2915\/183481"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,5,4]]},"references-count":13,"journal-issue":{"issue":"17","published-print":{"date-parts":[[2015,9,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btv281","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2015,9,1]]},"published":{"date-parts":[[2015,5,4]]}}}