{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,18]],"date-time":"2026-06-18T19:45:29Z","timestamp":1781811929010,"version":"3.54.5"},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"2","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016,1,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: SIMToolbox is an open-source, modular set of functions for MATLAB equipped with a user-friendly graphical interface and designed for processing two-dimensional and three-dimensional data acquired by structured illumination microscopy (SIM). Both optical sectioning and super-resolution applications are supported. The software is also capable of maximum a posteriori probability image estimation (MAP-SIM), an alternative method for reconstruction of structured illumination images. MAP-SIM can potentially reduce reconstruction artifacts, which commonly occur due to refractive index mismatch within the sample and to imperfections in the illumination.<\/jats:p>\n               <jats:p>Availability and implementation: SIMToolbox, example data and the online documentation are freely accessible at http:\/\/mmtg.fel.cvut.cz\/SIMToolbox.<\/jats:p>\n               <jats:p>Contact: \u00a0ghagen@uccs.edu<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btv576","type":"journal-article","created":{"date-parts":[[2015,10,8]],"date-time":"2015-10-08T01:29:10Z","timestamp":1444267750000},"page":"318-320","source":"Crossref","is-referenced-by-count":70,"title":["SIMToolbox: a MATLAB toolbox for structured illumination fluorescence microscopy"],"prefix":"10.1093","volume":"32","author":[{"given":"Pavel","family":"K\u0159\u00ed\u017eek","sequence":"first","affiliation":[{"name":"1 First Faculty of Medicine, Charles University in Prague, Prague 12800, Czech Republic,"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Tom\u00e1\u0161","family":"Luke\u0161","sequence":"additional","affiliation":[{"name":"2 Department of Radioelectronics, Faculty of Electrical Engineering, Czech Technical University in Prague, Prague 16627, Czech Republic,"},{"name":"3 Laboratoire d\u2019Optique Biom\u00e9dicale, \u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne, Lausanne CH-1015, Switzerland and"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Martin","family":"Ovesn\u00fd","sequence":"additional","affiliation":[{"name":"1 First Faculty of Medicine, Charles University in Prague, Prague 12800, Czech Republic,"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Karel","family":"Fliegel","sequence":"additional","affiliation":[{"name":"2 Department of Radioelectronics, Faculty of Electrical Engineering, Czech Technical University in Prague, Prague 16627, Czech Republic,"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Guy M.","family":"Hagen","sequence":"additional","affiliation":[{"name":"4 UCCS center for the BioFrontiers Institute, University of Colorado at Colorado Springs, Colorado Springs, CO 80918, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2015,10,6]]},"reference":[{"key":"2023020110281461100_btv576-B1","doi-asserted-by":"crossref","first-page":"246","DOI":"10.1046\/j.1365-2818.2001.00894.x","article-title":"Time-domain whole-field fluorescence lifetime imaging with optical sectioning","volume":"203","author":"Cole","year":"2001","journal-title":"J. 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