{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,31]],"date-time":"2026-01-31T10:07:41Z","timestamp":1769854061883,"version":"3.49.0"},"reference-count":5,"publisher":"Oxford University Press (OUP)","issue":"4","funder":[{"DOI":"10.13039\/100000051","name":"NHGRI","doi-asserted-by":"publisher","award":["U54HG003037"],"award-info":[{"award-number":["U54HG003037"]}],"id":[{"id":"10.13039\/100000051","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"NIH","doi-asserted-by":"publisher","award":["GM100233"],"award-info":[{"award-number":["GM100233"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016,2,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: BGT is a compact format, a fast command line tool and a simple web application for efficient and convenient query of whole-genome genotypes and frequencies across tens to hundreds of thousands of samples. On real data, it encodes the haplotypes of 32\u2009488 samples across 39.2 million SNPs into a 7.4 GB database and decodes up to 420 million genotypes per CPU second. The high performance enables real-time responses to complex queries.<\/jats:p>\n               <jats:p>Availability and implementation: \u00a0https:\/\/github.com\/lh3\/bgt<\/jats:p>\n               <jats:p>Contact: \u00a0hengli@broadinstitute.org<\/jats:p>","DOI":"10.1093\/bioinformatics\/btv613","type":"journal-article","created":{"date-parts":[[2015,10,25]],"date-time":"2015-10-25T07:00:56Z","timestamp":1445756456000},"page":"590-592","source":"Crossref","is-referenced-by-count":53,"title":["BGT: efficient and flexible genotype query across many samples"],"prefix":"10.1093","volume":"32","author":[{"given":"Heng","family":"Li","sequence":"first","affiliation":[{"name":"Medical Population Genetics Program, Broad Institute, Cambridge, MA 02142, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2015,10,24]]},"reference":[{"key":"2023020110345617100_btv613-B1","doi-asserted-by":"crossref","first-page":"56","DOI":"10.1038\/nature11632","article-title":"An integrated map of genetic variation from 1\u2009092 human genomes","volume":"491","author":"1000 Genomes Project Consortium","year":"2012","journal-title":"Nature"},{"key":"2023020110345617100_btv613-B2","doi-asserted-by":"crossref","first-page":"2156","DOI":"10.1093\/bioinformatics\/btr330","article-title":"The variant call format and VCFtools","volume":"27","author":"Danecek","year":"2011","journal-title":"Bioinformatics"},{"key":"2023020110345617100_btv613-B3","doi-asserted-by":"crossref","first-page":"1266","DOI":"10.1093\/bioinformatics\/btu014","article-title":"Efficient haplotype matching and storage using the positional Burrows-Wheeler transform (PBWT)","volume":"30","author":"Durbin","year":"2014","journal-title":"Bioinformatics"},{"key":"2023020110345617100_btv613-B4","article-title":"Efficient compression and analysis of large genetic variation datasets","author":"Layer","year":"2015","journal-title":"bioRxiv"},{"key":"2023020110345617100_btv613-B5","doi-asserted-by":"crossref","first-page":"S8","DOI":"10.1186\/1471-2164-15-S4-S8","article-title":"GrabBlur\u2013a framework to facilitate the secure exchange of whole-exome and -genome SNV data using VCF files","volume":"15","author":"Stade","year":"2014","journal-title":"BMC Genomics"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/32\/4\/590\/49017515\/bioinformatics_32_4_590.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/32\/4\/590\/49017515\/bioinformatics_32_4_590.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,1]],"date-time":"2023-02-01T19:55:41Z","timestamp":1675281341000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/32\/4\/590\/1743991"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,10,24]]},"references-count":5,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2016,2,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btv613","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2016,2,15]]},"published":{"date-parts":[[2015,10,24]]}}}