{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,2,1]],"date-time":"2023-02-01T22:40:25Z","timestamp":1675291225868},"reference-count":2,"publisher":"Oxford University Press (OUP)","issue":"7","license":[{"start":{"date-parts":[[2016,10,28]],"date-time":"2016-10-28T00:00:00Z","timestamp":1477612800000},"content-version":"vor","delay-in-days":339,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016,4,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: High-throughput sequencing technologies provide access to an increasing number of bacterial genomes. Today, many analyses involve the comparison of biological properties among many strains of a given species, or among species of a particular genus. Tools that can help the microbiologist with these tasks become increasingly important.<\/jats:p>\n               <jats:p>Results: Insyght is a comparative visualization tool whose core features combine a synchronized navigation across genomic data of multiple organisms with a versatile interoperability between complementary views. In this work, we have greatly increased the scope of the Insyght public dataset by including 2688 complete bacterial genomes available in Ensembl thus vastly improving its phylogenetic coverage. We also report the development of a virtual machine that allows users to easily set up and customize their own local Insyght server.<\/jats:p>\n               <jats:p>Availability and implementation: \u00a0http:\/\/genome.jouy.inra.fr\/Insyght<\/jats:p>\n               <jats:p>Contact: \u00a0Thomas.Lacroix@jouy.inra.fr<\/jats:p>","DOI":"10.1093\/bioinformatics\/btv689","type":"journal-article","created":{"date-parts":[[2015,11,26]],"date-time":"2015-11-26T02:03:25Z","timestamp":1448503405000},"page":"1083-1084","source":"Crossref","is-referenced-by-count":1,"title":["Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT"],"prefix":"10.1093","volume":"32","author":[{"given":"Thomas","family":"Lacroix","sequence":"first","affiliation":[{"name":"1 INRA, UR1404, Unit\u00e9 Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l\u2019Environnement, 78350 Jouy-en-Josas, France and"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sylvie","family":"Th\u00e9rond","sequence":"additional","affiliation":[{"name":"2 IDRIS-CNRS, UPS851, 91400 Orsay, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marc","family":"Rugeri","sequence":"additional","affiliation":[{"name":"2 IDRIS-CNRS, UPS851, 91400 Orsay, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Pierre","family":"Nicolas","sequence":"additional","affiliation":[{"name":"1 INRA, UR1404, Unit\u00e9 Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l\u2019Environnement, 78350 Jouy-en-Josas, France and"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Annie","family":"Gendrault","sequence":"additional","affiliation":[{"name":"1 INRA, UR1404, Unit\u00e9 Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l\u2019Environnement, 78350 Jouy-en-Josas, France and"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Valentin","family":"Loux","sequence":"additional","affiliation":[{"name":"1 INRA, UR1404, Unit\u00e9 Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l\u2019Environnement, 78350 Jouy-en-Josas, France and"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jean-Fran\u00e7ois","family":"Gibrat","sequence":"additional","affiliation":[{"name":"1 INRA, UR1404, Unit\u00e9 Math\u00e9matiques et Informatique Appliqu\u00e9es du G\u00e9nome \u00e0 l\u2019Environnement, 78350 Jouy-en-Josas, France and"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2015,11,24]]},"reference":[{"key":"2023020111593571700_btv689-B1","doi-asserted-by":"crossref","first-page":"D546","DOI":"10.1093\/nar\/gkt979","article-title":"Ensembl Genomes 2013: scaling up access to genome-wide data","volume":"42","author":"Kersey","year":"2014","journal-title":"Nucleic Acids Res."},{"key":"2023020111593571700_btv689-B2","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1093\/nar\/gku867","article-title":"Insyght: navigating amongst abundant homologues, syntenies and gene functional annotations in bacteria, it's that symbol!","volume":"42","author":"Lacroix","year":"2014","journal-title":"Nucleic Acids Res."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/32\/7\/1083\/49018326\/bioinformatics_32_7_1083.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/32\/7\/1083\/49018326\/bioinformatics_32_7_1083.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,1]],"date-time":"2023-02-01T22:16:10Z","timestamp":1675289770000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/32\/7\/1083\/1743891"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2015,11,24]]},"references-count":2,"journal-issue":{"issue":"7","published-print":{"date-parts":[[2016,4,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btv689","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2016,4,1]]},"published":{"date-parts":[[2015,11,24]]}}}