{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,30]],"date-time":"2025-10-30T22:31:22Z","timestamp":1761863482198},"reference-count":11,"publisher":"Oxford University Press (OUP)","issue":"8","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016,4,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>INSECT is a user-friendly web server to predict the occurrence of Cis-Regulatory Modules (CRMs), which control gene expression. Here, we present a new release of INSECT which includes several new features, such as whole genome analysis, nucleosome occupancy predictions, and which provides additional links to third-party functional tools that complement user capabilities, CRM analysis and hypothesis construction. Improvements in the core implementation have led to a faster and more efficient tool. In addition, this new release introduces a new interface designed for a more integrative and dynamic user experience.<\/jats:p>\n               <jats:p>Availability and implementation: \u00a0http:\/\/bioinformatics.ibioba-mpsp-conicet.gov.ar\/INSECT2<\/jats:p>\n               <jats:p>Contact: \u00a0pyankilevich@ibioba-mpsp-conicet.gov.ar<\/jats:p>","DOI":"10.1093\/bioinformatics\/btv726","type":"journal-article","created":{"date-parts":[[2015,12,13]],"date-time":"2015-12-13T01:38:56Z","timestamp":1449970736000},"page":"1229-1231","source":"Crossref","is-referenced-by-count":14,"title":["INSECT 2.0: a web-server for genome-wide <i>cis<\/i>-regulatory modules prediction"],"prefix":"10.1093","volume":"32","author":[{"given":"R. Gonzalo","family":"Parra","sequence":"first","affiliation":[{"name":"1 Facultad De Ciencias Exactas Y Naturales, Universidad De Buenos Aires, Buenos Aires, Argentina and"}]},{"given":"Cristian O.","family":"Rohr","sequence":"additional","affiliation":[{"name":"1 Facultad De Ciencias Exactas Y Naturales, Universidad De Buenos Aires, Buenos Aires, Argentina and"}]},{"given":"Daniel","family":"Koile","sequence":"additional","affiliation":[{"name":"2 Instituto De Investigacion En Biomedicina De Buenos Aires (IBioBA), CONICET, Partner Institute of the Max Planck Society, Godoy Cruz 2390, Buenos Aires C1425FQA, Argentina"}]},{"given":"Carolina","family":"Perez-Castro","sequence":"additional","affiliation":[{"name":"2 Instituto De Investigacion En Biomedicina De Buenos Aires (IBioBA), CONICET, Partner Institute of the Max Planck Society, Godoy Cruz 2390, Buenos Aires C1425FQA, Argentina"}]},{"given":"Patricio","family":"Yankilevich","sequence":"additional","affiliation":[{"name":"2 Instituto De Investigacion En Biomedicina De Buenos Aires (IBioBA), CONICET, Partner Institute of the Max Planck Society, Godoy Cruz 2390, Buenos Aires C1425FQA, Argentina"}]}],"member":"286","published-online":{"date-parts":[[2015,12,12]]},"reference":[{"key":"2023020112210925100_btv726-B1","doi-asserted-by":"crossref","first-page":"e109443","DOI":"10.1371\/journal.pone.0109443","article-title":"Promoter analysis reveals globally differential regulation of human long non-coding RNA and protein-coding genes","volume":"9","author":"Alam","year":"2014","journal-title":"PLoS One"},{"key":"2023020112210925100_btv726-B2","doi-asserted-by":"crossref","first-page":"8465","DOI":"10.1038\/srep08465","article-title":"An integrative analysis of TFBS-clustered regions reveals new transcriptional regulation models on the accessible chromatin landscape","volume":"5","author":"Chen","year":"2015","journal-title":"Sci. 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