{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,13]],"date-time":"2026-03-13T22:26:41Z","timestamp":1773440801883,"version":"3.50.1"},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"11","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016,6,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary Unipept is an open source web application that is designed for metaproteomics analysis with a focus on interactive datavisualization. It is underpinned by a fast index built from UniProtKB and the NCBI taxonomy that enables quick retrieval of all UniProt entries in which a given tryptic peptide occurs. Unipept version 2.4 introduced web services that provide programmatic access to the metaproteomics analysis features. This enables integration of Unipept functionality in custom applications and data processing pipelines.<\/jats:p>\n               <jats:p>Availability and implementation: The web services are freely available at http:\/\/api.unipept.ugent.be and are open sourced under the MIT license.<\/jats:p>\n               <jats:p>Contact: \u00a0Unipept@ugent.be<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btw039","type":"journal-article","created":{"date-parts":[[2016,2,15]],"date-time":"2016-02-15T01:09:07Z","timestamp":1455498547000},"page":"1746-1748","source":"Crossref","is-referenced-by-count":55,"title":["Unipept web services for metaproteomics analysis"],"prefix":"10.1093","volume":"32","author":[{"given":"Bart","family":"Mesuere","sequence":"first","affiliation":[{"name":"1 Department of Applied Mathematics, Computer Science and Statistics,"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Toon","family":"Willems","sequence":"additional","affiliation":[{"name":"1 Department of Applied Mathematics, Computer Science and Statistics,"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Felix","family":"Van der Jeugt","sequence":"additional","affiliation":[{"name":"1 Department of Applied Mathematics, Computer Science and Statistics,"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bart","family":"Devreese","sequence":"additional","affiliation":[{"name":"2 Laboratory for Protein Biochemistry and Biomolecular Engineering, Faculty of Sciences and"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Peter","family":"Vandamme","sequence":"additional","affiliation":[{"name":"3 Laboratory for Microbiology Faculty of Sciences, Ghent University, B-9000, Ghent, Belgium"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Peter","family":"Dawyndt","sequence":"additional","affiliation":[{"name":"1 Department of Applied Mathematics, Computer Science and Statistics,"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2016,1,27]]},"reference":[{"key":"2023020112291167700_btw039-B1","doi-asserted-by":"crossref","first-page":"304","DOI":"10.1093\/nar\/28.1.304","article-title":"The ENZYME database in 2000","volume":"28","author":"Bairoch","year":"2000","journal-title":"Nucleic Acids Res"},{"key":"2023020112291167700_btw039-B2","doi-asserted-by":"crossref","first-page":"2301","DOI":"10.1109\/TVCG.2011.185","article-title":"D\u00b3 data-driven documents","volume":"17","author":"Bostock","year":"2011","journal-title":"IEEE Trans. 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