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It supports standard chemical input\/output exchange formats i.e. RXN\/SMILES, computes AAM, highlights BCs and creates images of the mapped reaction. This aids in the analysis of metabolic pathways and the ability to perform comparative studies of chemical reactions based on these features.<\/jats:p>\n               <jats:p>Availability and implementation: This software is implemented in Java, supported on Windows, Linux and Mac OSX, and freely available at https:\/\/github.com\/asad\/ReactionDecoder<\/jats:p>\n               <jats:p>Contact: asad@ebi.ac.uk or s9asad@gmail.com<\/jats:p>","DOI":"10.1093\/bioinformatics\/btw096","type":"journal-article","created":{"date-parts":[[2016,2,24]],"date-time":"2016-02-24T02:56:21Z","timestamp":1456282581000},"page":"2065-2066","source":"Crossref","is-referenced-by-count":92,"title":["Reaction Decoder Tool (RDT): extracting features from chemical reactions"],"prefix":"10.1093","volume":"32","author":[{"given":"Syed Asad","family":"Rahman","sequence":"first","affiliation":[{"name":"1 European Molecular Biology Laboratory, European Bioinformatics Institute EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"},{"name":"2 Congenica Ltd, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK"}]},{"given":"Gilliean","family":"Torrance","sequence":"additional","affiliation":[{"name":"1 European Molecular Biology Laboratory, European Bioinformatics Institute EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Lorenzo","family":"Baldacci","sequence":"additional","affiliation":[{"name":"1 European Molecular Biology Laboratory, European Bioinformatics Institute EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"},{"name":"3 DISI, University of Bologna, V.Le Risorgimento 2, Bologna, Italy"}]},{"given":"Sergio","family":"Mart\u00ednez Cuesta","sequence":"additional","affiliation":[{"name":"1 European Molecular Biology Laboratory, European Bioinformatics Institute EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"},{"name":"4 Cancer Research UK Cambridge Institute, University of Cambridge, Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE, UK"}]},{"given":"Franz","family":"Fenninger","sequence":"additional","affiliation":[{"name":"1 European Molecular Biology Laboratory, European Bioinformatics Institute EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"},{"name":"5 Michael Smith Laboratories, the University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada,"}]},{"given":"Nimish","family":"Gopal","sequence":"additional","affiliation":[{"name":"1 European Molecular Biology Laboratory, European Bioinformatics Institute EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Saket","family":"Choudhary","sequence":"additional","affiliation":[{"name":"1 European Molecular Biology Laboratory, European Bioinformatics Institute EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"John W.","family":"May","sequence":"additional","affiliation":[{"name":"1 European 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