{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,19]],"date-time":"2026-05-19T11:56:06Z","timestamp":1779191766522,"version":"3.51.4"},"reference-count":14,"publisher":"Oxford University Press (OUP)","issue":"16","license":[{"start":{"date-parts":[[2016,10,28]],"date-time":"2016-10-28T00:00:00Z","timestamp":1477612800000},"content-version":"vor","delay-in-days":203,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016,8,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Promoter capture Hi-C (PCHi-C) allows the genome-wide interrogation of physical interactions between distal DNA regulatory elements and gene promoters in multiple tissue contexts. Visual integration of the resultant chromosome interaction maps with other sources of genomic annotations can provide insight into underlying regulatory mechanisms. We have developed Capture HiC Plotter (CHiCP), a web-based tool that allows interactive exploration of PCHi-C interaction maps and integration with both public and user-defined genomic datasets.<\/jats:p>\n               <jats:p>Availability and Implementation: CHiCP is freely accessible from www.chicp.org and supports most major HTML5 compliant web browsers. Full source code and installation instructions are available from http:\/\/github.com\/D-I-L\/django-chicp.<\/jats:p>\n               <jats:p>Contact: \u00a0ob219@cam.ac.uk<\/jats:p>","DOI":"10.1093\/bioinformatics\/btw173","type":"journal-article","created":{"date-parts":[[2016,4,10]],"date-time":"2016-04-10T00:08:01Z","timestamp":1460246881000},"page":"2511-2513","source":"Crossref","is-referenced-by-count":68,"title":["CHiCP: a web-based tool for the integrative and interactive visualization of promoter capture Hi-C datasets"],"prefix":"10.1093","volume":"32","author":[{"given":"E. C.","family":"Schofield","sequence":"first","affiliation":[{"name":"1 JDRF\/Wellcome Trust Diabetes and Inflammation Laboratory, NIHR Cambridge Biomedical Research Centre, Department of Medical Genetics, Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"T.","family":"Carver","sequence":"additional","affiliation":[{"name":"1 JDRF\/Wellcome Trust Diabetes and Inflammation Laboratory, NIHR Cambridge Biomedical Research Centre, Department of Medical Genetics, Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"P.","family":"Achuthan","sequence":"additional","affiliation":[{"name":"1 JDRF\/Wellcome Trust Diabetes and Inflammation Laboratory, NIHR Cambridge Biomedical Research Centre, Department of Medical Genetics, Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"P.","family":"Freire-Pritchett","sequence":"additional","affiliation":[{"name":"2 Nuclear Dynamics Programme, The Babraham Institute, Cambridge CB22 3AT, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"M.","family":"Spivakov","sequence":"additional","affiliation":[{"name":"2 Nuclear Dynamics Programme, The Babraham Institute, Cambridge CB22 3AT, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"J. A.","family":"Todd","sequence":"additional","affiliation":[{"name":"1 JDRF\/Wellcome Trust Diabetes and Inflammation Laboratory, NIHR Cambridge Biomedical Research Centre, Department of Medical Genetics, Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"O. S.","family":"Burren","sequence":"additional","affiliation":[{"name":"1 JDRF\/Wellcome Trust Diabetes and Inflammation Laboratory, NIHR Cambridge Biomedical Research Centre, Department of Medical Genetics, Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2016,4,8]]},"reference":[{"key":"2023020112532999400_btw173-B1","doi-asserted-by":"crossref","first-page":"1463","DOI":"10.1093\/bioinformatics\/btu842","article-title":"J-Circos: an interactive Circos Plotter","volume":"31","author":"An","year":"2015","journal-title":"Bioinformatics"},{"key":"2023020112532999400_btw173-B2","doi-asserted-by":"crossref","first-page":"268","DOI":"10.1016\/j.ymeth.2012.05.001","article-title":"Hi-C: a comprehensive technique to capture the conformation of genomes","volume":"58","author":"Belton","year":"2012","journal-title":"Methods"},{"key":"2023020112532999400_btw173-B3","article-title":"CHiCAGO: robust detection of DNA looping interactions in capture Hi-C data","author":"Cairns","year":"2015","journal-title":"bioRxiv"},{"key":"2023020112532999400_btw173-B4","doi-asserted-by":"crossref","first-page":"D662","DOI":"10.1093\/nar\/gku1010","article-title":"Ensembl 2015","volume":"43","author":"Cunningham","year":"2015","journal-title":"Nucleic Acids Res"},{"key":"2023020112532999400_btw173-B5","doi-asserted-by":"crossref","first-page":"1118","DOI":"10.1038\/ng.717","article-title":"Genome-wide meta-analysis increases to 71 the number of confirmed Crohn\u2019s disease susceptibility loci","volume":"42","author":"Franke","year":"2010","journal-title":"Nat. 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