{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,12]],"date-time":"2026-03-12T00:10:12Z","timestamp":1773274212885,"version":"3.50.1"},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"16","license":[{"start":{"date-parts":[[2016,10,28]],"date-time":"2016-10-28T00:00:00Z","timestamp":1477612800000},"content-version":"vor","delay-in-days":203,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016,8,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: SBtab is a table-based data format for Systems Biology, designed to support automated data integration and model building. It uses the structure of spreadsheets and defines conventions for table structure, controlled vocabularies and semantic annotations. The format comes with predefined table types for experimental data and SBML-compliant model structures and can easily be customized to cover new types of data.<\/jats:p>\n               <jats:p>Availability and Implementation: SBtab documents can be created and edited with any text editor or spreadsheet tool. The website www.sbtab.net provides online tools for syntax validation and conversion to SBML and HTML, as well as software for using SBtab in MS Excel, MATLAB and R. The stand-alone Python code contains functions for file parsing, validation, conversion to SBML and HTML and an interface to SQLite databases, to be integrated into Systems Biology workflows. A detailed specification of SBtab, including examples and descriptions of table types and available tools, can be found at www.sbtab.net.<\/jats:p>\n               <jats:p>Contact: wolfram.liebermeister@gmail.com<\/jats:p>","DOI":"10.1093\/bioinformatics\/btw179","type":"journal-article","created":{"date-parts":[[2016,4,10]],"date-time":"2016-04-10T00:08:01Z","timestamp":1460246881000},"page":"2559-2561","source":"Crossref","is-referenced-by-count":33,"title":["SBtab: a flexible table format for data exchange in systems biology"],"prefix":"10.1093","volume":"32","author":[{"given":"Timo","family":"Lubitz","sequence":"first","affiliation":[{"name":"1Theoretical Biophysics, Institute of Biology, Humboldt-Universit\u00e4t zu Berlin, Berlin, Germany"}]},{"given":"Jens","family":"Hahn","sequence":"additional","affiliation":[{"name":"1Theoretical Biophysics, Institute of Biology, Humboldt-Universit\u00e4t zu Berlin, Berlin, Germany"}]},{"given":"Frank T.","family":"Bergmann","sequence":"additional","affiliation":[{"name":"2COS\/Bioquant, Ruprecht-Karls-Universit\u00e4t Heidelberg, Heidelberg, Germany"}]},{"given":"Elad","family":"Noor","sequence":"additional","affiliation":[{"name":"3Institute of Molecular Systems Biology, Eidgen\u00f6ssische Technische Hochschule Z\u00fcrich, Zurich, Switzerland"}]},{"given":"Edda","family":"Klipp","sequence":"additional","affiliation":[{"name":"1Theoretical Biophysics, Institute of Biology, Humboldt-Universit\u00e4t zu Berlin, Berlin, Germany"}]},{"given":"Wolfram","family":"Liebermeister","sequence":"additional","affiliation":[{"name":"4Institute of Biochemistry, Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin, Berlin, Germany"}]}],"member":"286","published-online":{"date-parts":[[2016,4,8]]},"reference":[{"key":"2023020112584563600_btw179-B1","doi-asserted-by":"crossref","first-page":"85.","DOI":"10.1186\/s12918-014-0085-3","article-title":"KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems","volume":"8","author":"Costa","year":"2014","journal-title":"BMC Syst. Biol"},{"key":"2023020112584563600_btw179-B2","doi-asserted-by":"crossref","first-page":"D770","DOI":"10.1093\/nar\/gkr874","article-title":"eQuilibrator \u2013 the biochemical thermodynamics calculator","volume":"D1","author":"Flamholz","year":"2012","journal-title":"Nucleic Acids Res"},{"key":"2023020112584563600_btw179-B3","doi-asserted-by":"crossref","first-page":"524","DOI":"10.1093\/bioinformatics\/btg015","article-title":"The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models","volume":"19","author":"Hucka","year":"2003","journal-title":"Bioinformatics"},{"key":"2023020112584563600_btw179-B4","doi-asserted-by":"crossref","first-page":"D580","DOI":"10.1093\/nar\/gkr1097","article-title":"Identifiers.org and MIRIAM Registry: community resources to provide persistent identification","volume":"40","author":"Juty","year":"2012","journal-title":"Nucleic Acids Res"},{"key":"2023020112584563600_btw179-B5","doi-asserted-by":"crossref","first-page":"1509","DOI":"10.1038\/nbt1156","article-title":"Minimum information requested in the annotation of biochemical models (MIRIAM)","volume":"23","author":"Le Nov\u00e8re","year":"2005","journal-title":"Nat. Biotechnol"},{"key":"2023020112584563600_btw179-B6","doi-asserted-by":"crossref","first-page":"735","DOI":"10.1038\/nbt.1558","article-title":"The systems biology graphical notation","volume":"27","author":"Le Nov\u00e8re","year":"2009","journal-title":"Nat. Biotechnol"},{"key":"2023020112584563600_btw179-B7","article-title":"SBtab \u2013 conventions for structured data tables in systems biology","author":"Liebermeister","year":"2015","journal-title":"ArXiv e-print service"},{"key":"2023020112584563600_btw179-B8","doi-asserted-by":"crossref","first-page":"16298","DOI":"10.1021\/jp108764b","article-title":"Parameter balancing in kinetic models of cell metabolism","volume":"114","author":"Lubitz","year":"2010","journal-title":"J. Phys. Chem. B"},{"key":"2023020112584563600_btw179-B9","doi-asserted-by":"crossref","first-page":"143","DOI":"10.1089\/omi.2008.0019","article-title":"The first RSBI (ISA-TAB) workshop: can a simple format work for complex studies?","volume":"12","author":"Sansone","year":"2008","journal-title":"OMICS J. Integr. Biol"},{"key":"2023020112584563600_btw179-B10","doi-asserted-by":"crossref","DOI":"10.1371\/journal.pone.0079195","article-title":"Systematic construction of kinetic models from genome-scale metabolic networks","volume":"8","author":"Stanford","year":"2013","journal-title":"PLoS One"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/32\/16\/2559\/49019956\/bioinformatics_32_16_2559.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/32\/16\/2559\/49019956\/bioinformatics_32_16_2559.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,1]],"date-time":"2023-02-01T22:58:38Z","timestamp":1675292318000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/32\/16\/2559\/1743291"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,4,8]]},"references-count":10,"journal-issue":{"issue":"16","published-print":{"date-parts":[[2016,8,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btw179","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2016,8,15]]},"published":{"date-parts":[[2016,4,8]]}}}