{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,24]],"date-time":"2026-04-24T20:33:31Z","timestamp":1777062811800,"version":"3.51.4"},"reference-count":39,"publisher":"Oxford University Press (OUP)","issue":"16","license":[{"start":{"date-parts":[[2016,10,28]],"date-time":"2016-10-28T00:00:00Z","timestamp":1477612800000},"content-version":"vor","delay-in-days":203,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016,8,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: MOCAT2 is a software pipeline for metagenomic sequence assembly and gene prediction with novel features for taxonomic and functional abundance profiling. The automated generation and efficient annotation of non-redundant reference catalogs by propagating pre-computed assignments from 18 databases covering various functional categories allows for fast and comprehensive functional characterization of metagenomes.<\/jats:p>\n               <jats:p>Availability and Implementation: MOCAT2 is implemented in Perl 5 and Python 2.7, designed for 64-bit UNIX systems and offers support for high-performance computer usage via LSF, PBS or SGE queuing systems; source code is freely available under the GPL3 license at http:\/\/mocat.embl.de.<\/jats:p>\n               <jats:p>Contact: bork@embl.de<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btw183","type":"journal-article","created":{"date-parts":[[2016,4,10]],"date-time":"2016-04-10T00:08:01Z","timestamp":1460246881000},"page":"2520-2523","source":"Crossref","is-referenced-by-count":169,"title":["MOCAT2: a metagenomic assembly, annotation and profiling framework"],"prefix":"10.1093","volume":"32","author":[{"given":"Jens Roat","family":"Kultima","sequence":"first","affiliation":[{"name":"1 Structural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Luis Pedro","family":"Coelho","sequence":"additional","affiliation":[{"name":"1 Structural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kristoffer","family":"Forslund","sequence":"additional","affiliation":[{"name":"1 Structural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jaime","family":"Huerta-Cepas","sequence":"additional","affiliation":[{"name":"1 Structural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Simone S.","family":"Li","sequence":"additional","affiliation":[{"name":"1 Structural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany"},{"name":"2 School of Biotechnology and Biomolecular Sciences, University of New South Wales, 2052 Sydney, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marja","family":"Driessen","sequence":"additional","affiliation":[{"name":"1 Structural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Anita Yvonne","family":"Voigt","sequence":"additional","affiliation":[{"name":"1 Structural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany"},{"name":"3 Molecular Medicine Partnership Unit, University of Heidelberg and European Molecular Biology Laboratory, 69120 Heidelberg, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Georg","family":"Zeller","sequence":"additional","affiliation":[{"name":"1 Structural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Shinichi","family":"Sunagawa","sequence":"additional","affiliation":[{"name":"1 Structural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Peer","family":"Bork","sequence":"additional","affiliation":[{"name":"1 Structural and Computational Biology Unit, European Molecular Biology Laboratory, 69117 Heidelberg, Germany"},{"name":"3 Molecular Medicine Partnership Unit, University of Heidelberg and European Molecular Biology Laboratory, 69120 Heidelberg, Germany"},{"name":"4 Department of Bioinformatics, Biocenter, University of W\u00fcrzburg, 97074 W\u00fcrzburg, Germany"},{"name":"5 Max Delbr\u00fcck Centre for Molecular Medicine, 13125 Berlin, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2016,4,8]]},"reference":[{"key":"2023020112525262800_btw183-B1","doi-asserted-by":"crossref","first-page":"e1002358","DOI":"10.1371\/journal.pcbi.1002358","article-title":"Metabolic reconstruction for metagenomic data and its application to the human microbiome","volume":"8","author":"Abubucker","year":"2012","journal-title":"PLoS Comput. 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