{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,24]],"date-time":"2026-06-24T06:44:44Z","timestamp":1782283484866,"version":"3.54.5"},"reference-count":26,"publisher":"Oxford University Press (OUP)","issue":"17","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016,9,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: Genome studies have become cheaper and easier than ever before, due to the decreased costs of high-throughput sequencing and the free availability of analysis software. However, the quality of genome or transcriptome assemblies can vary a lot. Therefore, quality assessment of assemblies and annotations are crucial aspects of genome analysis pipelines.<\/jats:p>\n               <jats:p>Results: We developed DOGMA, a program for fast and easy quality assessment of transcriptome and proteome data based on conserved protein domains. DOGMA measures the completeness of a given transcriptome or proteome and provides information about domain content for further analysis. DOGMA provides a very fast way to do quality assessment within seconds.<\/jats:p>\n               <jats:p>Availability and Implementation: DOGMA is implemented in Python and published under GNU GPL v.3 license. The source code is available on https:\/\/ebbgit.uni-muenster.de\/domainWorld\/DOGMA\/ .<\/jats:p>\n               <jats:p>Contacts: \u00a0e.dohmen@wwu.de or c.kemena@wwu.de<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btw231","type":"journal-article","created":{"date-parts":[[2016,5,6]],"date-time":"2016-05-06T03:04:47Z","timestamp":1462503887000},"page":"2577-2581","source":"Crossref","is-referenced-by-count":43,"title":["DOGMA: domain-based transcriptome and proteome quality assessment"],"prefix":"10.1093","volume":"32","author":[{"given":"Elias","family":"Dohmen","sequence":"first","affiliation":[{"name":"1 Institute for Evolution and Biodiversity, University of M\u00fcnster, M\u00fcnster 48149, Germany"},{"name":"2 Institute for Bioinformatics and Chemoinformatics, Westphalian University of Applied Sciences, Recklinghausen 45665, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Lukas P.M.","family":"Kremer","sequence":"additional","affiliation":[{"name":"1 Institute for Evolution and Biodiversity, University of M\u00fcnster, M\u00fcnster 48149, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Erich","family":"Bornberg-Bauer","sequence":"additional","affiliation":[{"name":"1 Institute for Evolution and Biodiversity, University of M\u00fcnster, M\u00fcnster 48149, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Carsten","family":"Kemena","sequence":"additional","affiliation":[{"name":"1 Institute for Evolution and Biodiversity, University of M\u00fcnster, M\u00fcnster 48149, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2016,5,5]]},"reference":[{"key":"2023020112590034600_btw231-B1","doi-asserted-by":"crossref","first-page":"154","DOI":"10.1186\/s12859-015-0570-8","article-title":"Domain similarity based orthology detection","volume":"16","author":"Bitard-Feildel","year":"2015","journal-title":"BMC Bioinformatics"},{"key":"2023020112590034600_btw231-B2","doi-asserted-by":"crossref","first-page":"435","DOI":"10.1093\/bioinformatics\/bts723","article-title":"ALE: A generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies","volume":"29","author":"Clark","year":"2013","journal-title":"Bioinformatics"},{"key":"2023020112590034600_btw231-B3","doi-asserted-by":"crossref","first-page":"D662","DOI":"10.1093\/nar\/gku1010","article-title":"Ensembl 2015","volume":"43","author":"Cunningham","year":"2014","journal-title":"Nucleic Acids Res"},{"key":"2023020112590034600_btw231-B4","doi-asserted-by":"crossref","first-page":"231","DOI":"10.1016\/j.jmb.2005.02.007","article-title":"Multi-domain proteins in the three kingdoms of life: orphan domains and other unassigned regions","volume":"348","author":"Ekman","year":"2005","journal-title":"J. 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