{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,9,23]],"date-time":"2026-09-23T15:42:43Z","timestamp":1790178163511,"version":"4.1.0"},"reference-count":20,"publisher":"Oxford University Press (OUP)","issue":"19","license":[{"start":{"date-parts":[[2016,10,26]],"date-time":"2016-10-26T00:00:00Z","timestamp":1477440000000},"content-version":"vor","delay-in-days":138,"URL":"http:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016,10,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:p>Summary: Visualizing and summarizing data from genomic studies continues to be a challenge. Here, we introduce the GenVisR package to addresses this challenge by providing highly customizable, publication-quality graphics focused on cohort level genome analyses. GenVisR provides a rapid and easy-to-use suite of genomic visualization tools, while maintaining a high degree of flexibility by leveraging the abilities of ggplot2 and Bioconductor.<\/jats:p>\n                  <jats:p>Availability and Implementation: GenVisR is an R package available via Bioconductor (https:\/\/bioconductor.org\/packages\/GenVisR) under GPLv3. Support is available via GitHub (https:\/\/github.com\/griffithlab\/GenVisR\/issues) and the Bioconductor support website.<\/jats:p>\n                  <jats:p>Contacts: \u00a0obigriffith@wustl.edu or mgriffit@wustl.edu<\/jats:p>\n                  <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btw325","type":"journal-article","created":{"date-parts":[[2016,6,10]],"date-time":"2016-06-10T23:54:37Z","timestamp":1465602877000},"page":"3012-3014","source":"Crossref","is-referenced-by-count":308,"title":["GenVisR: Genomic Visualizations in R"],"prefix":"10.1093","volume":"32","author":[{"given":"Zachary L.","family":"Skidmore","sequence":"first","affiliation":[{"name":"1 McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Alex H.","family":"Wagner","sequence":"additional","affiliation":[{"name":"1 McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Robert","family":"Lesurf","sequence":"additional","affiliation":[{"name":"1 McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Katie M.","family":"Campbell","sequence":"additional","affiliation":[{"name":"1 McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jason","family":"Kunisaki","sequence":"additional","affiliation":[{"name":"1 McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Obi L.","family":"Griffith","sequence":"additional","affiliation":[{"name":"1 McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA"},{"name":"2 Department of Medicine"},{"name":"3 Siteman Cancer Center"},{"name":"4 Department of Genetics, Washington University School of Medicine, St. Louis, MO 63110, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Malachi","family":"Griffith","sequence":"additional","affiliation":[{"name":"1 McDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA"},{"name":"3 Siteman Cancer Center"},{"name":"4 Department of Genetics, Washington University School of Medicine, St. Louis, MO 63110, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2016,6,10]]},"reference":[{"key":"2023020113463768500_btw325-B1","doi-asserted-by":"crossref","first-page":"899","DOI":"10.1038\/nature08822","article-title":"The landscape of somatic copy-number alteration across human cancers","volume":"463","author":"Beroukhim","year":"2010","journal-title":"Nature"},{"key":"2023020113463768500_btw325-B2","doi-asserted-by":"crossref","first-page":"61","DOI":"10.1038\/nature11412","article-title":"Comprehensive molecular portraits of human breast tumours","volume":"490","author":"Cancer Genome Atlas Network","year":"2012","journal-title":"Nature"},{"key":"2023020113463768500_btw325-B3","doi-asserted-by":"crossref","first-page":"1061","DOI":"10.1038\/nature07385","article-title":"Comprehensive genomic characterization defines human glioblastoma genes and core pathways","volume":"455","author":"Cancer Genome Atlas Research Network","year":"2008","journal-title":"Nature"},{"key":"2023020113463768500_btw325-B4","doi-asserted-by":"crossref","first-page":"R110","DOI":"10.1186\/gb-2013-14-10-r110","article-title":"Modeling precision treatment of breast cancer","volume":"14","author":"Daemen","year":"2013","journal-title":"Genome Biol"},{"key":"2023020113463768500_btw325-B5","doi-asserted-by":"crossref","first-page":"438","DOI":"10.1186\/s13059-014-0438-7","article-title":"Organizing knowledge to enable personalization of medicine in cancer","volume":"15","author":"Good","year":"2014","journal-title":"Genome Biol"},{"key":"2023020113463768500_btw325-B6","doi-asserted-by":"crossref","first-page":"1121","DOI":"10.1016\/j.cell.2012.08.024","article-title":"Genomic landscape of non-small cell lung cancer in smokers and never-smokers","volume":"150","author":"Govindan","year":"2012","journal-title":"Cell"},{"key":"2023020113463768500_btw325-B7","doi-asserted-by":"crossref","first-page":"e1004274","DOI":"10.1371\/journal.pcbi.1004274","article-title":"Genome Modeling System: A Knowledge Management Platform for Genomics","volume":"11","author":"Griffith","year":"2015","journal-title":"PLoS Comput. 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