{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,28]],"date-time":"2026-03-28T08:20:04Z","timestamp":1774686004507,"version":"3.50.1"},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"18","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016,9,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>The GHap R package was designed to call haplotypes from phased marker data. Given user-defined haplotype blocks (HapBlock), the package identifies the different haplotype alleles (HapAllele) present in the data and scores sample haplotype allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2 copies). The output is not only useful for analyses that can handle multi-allelic markers, but is also conveniently formatted for existing pipelines intended for bi-allelic markers.<\/jats:p>\n               <jats:p>Availability and implementation: \u00a0https:\/\/cran.r-project.org\/package=GHap<\/jats:p>\n               <jats:p>Contact: \u00a0ytutsunomiya@gmail.com<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btw356","type":"journal-article","created":{"date-parts":[[2016,6,10]],"date-time":"2016-06-10T00:56:16Z","timestamp":1465520176000},"page":"2861-2862","source":"Crossref","is-referenced-by-count":39,"title":["GHap: an R package for genome-wide haplotyping"],"prefix":"10.1093","volume":"32","author":[{"given":"Yuri T.","family":"Utsunomiya","sequence":"first","affiliation":[{"name":"1 Departamento de Medicina Veterin\u00e1ria Preventiva e Reprodu\u00e7\u00e3o Animal, UNESP \u2013 Univ. Estadual Paulista, Faculdade de Ci\u00eancias Agr\u00e1rias e Veterin\u00e1rias, 14884-900 Jaboticabal, S\u00e3o Paulo, Brazil"},{"name":"2 International Atomic Energy Agency (IAEA) Collaborating Centre on Animal Genomics and Bioinformatics, 16050-680 Ara\u00e7atuba, S\u00e3o Paulo, Brazil"}]},{"given":"Marco","family":"Milanesi","sequence":"additional","affiliation":[{"name":"2 International Atomic Energy Agency (IAEA) Collaborating Centre on Animal Genomics and Bioinformatics, 16050-680 Ara\u00e7atuba, S\u00e3o Paulo, Brazil"},{"name":"3 Departamento de Apoio, Produ\u00e7\u00e3o e Sa\u00fade Animal, UNESP \u2013 Univ. Estadual Paulista, Faculdade de Medicina Veterin\u00e1ria de Ara\u00e7atuba, 16050-680 Ara\u00e7atuba, S\u00e3o Paulo, Brazil"}]},{"given":"Adam T. H.","family":"Utsunomiya","sequence":"additional","affiliation":[{"name":"2 International Atomic Energy Agency (IAEA) Collaborating Centre on Animal Genomics and Bioinformatics, 16050-680 Ara\u00e7atuba, S\u00e3o Paulo, Brazil"},{"name":"3 Departamento de Apoio, Produ\u00e7\u00e3o e Sa\u00fade Animal, UNESP \u2013 Univ. Estadual Paulista, Faculdade de Medicina Veterin\u00e1ria de Ara\u00e7atuba, 16050-680 Ara\u00e7atuba, S\u00e3o Paulo, Brazil"}]},{"given":"Paolo","family":"Ajmone-Marsan","sequence":"additional","affiliation":[{"name":"4 Istituto di Zootecnica, Universit\u00e0 Cattolica del Sacro Cuore, 29122 Piacenza, Italy"}]},{"given":"Jos\u00e9 F.","family":"Garcia","sequence":"additional","affiliation":[{"name":"1 Departamento de Medicina Veterin\u00e1ria Preventiva e Reprodu\u00e7\u00e3o Animal, UNESP \u2013 Univ. Estadual Paulista, Faculdade de Ci\u00eancias Agr\u00e1rias e Veterin\u00e1rias, 14884-900 Jaboticabal, S\u00e3o Paulo, Brazil"},{"name":"2 International Atomic Energy Agency (IAEA) Collaborating Centre on Animal Genomics and Bioinformatics, 16050-680 Ara\u00e7atuba, S\u00e3o Paulo, Brazil"},{"name":"3 Departamento de Apoio, Produ\u00e7\u00e3o e Sa\u00fade Animal, UNESP \u2013 Univ. 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