{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,19]],"date-time":"2026-02-19T04:52:24Z","timestamp":1771476744399,"version":"3.50.1"},"reference-count":18,"publisher":"Oxford University Press (OUP)","issue":"22","license":[{"start":{"date-parts":[[2016,7,13]],"date-time":"2016-07-13T00:00:00Z","timestamp":1468368000000},"content-version":"vor","delay-in-days":0,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2016,11,15]]},"abstract":"<jats:p>Summary: The MSAViewer is a quick and easy visualization and analysis JavaScript component for Multiple Sequence Alignment data of any size. Core features include interactive navigation through the alignment, application of popular color schemes, sorting, selecting and filtering. The MSAViewer is \u2018web ready\u2019: written entirely in JavaScript, compatible with modern web browsers and does not require any specialized software. The MSAViewer is part of the BioJS collection of components.<\/jats:p>\n               <jats:p>Availability and Implementation: The MSAViewer is released as open source software under the Boost Software License 1.0. Documentation, source code and the viewer are available at http:\/\/msa.biojs.net\/.<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <jats:p>Contact: \u00a0msa@bio.sh<\/jats:p>","DOI":"10.1093\/bioinformatics\/btw474","type":"journal-article","created":{"date-parts":[[2016,7,14]],"date-time":"2016-07-14T06:18:47Z","timestamp":1468477127000},"page":"3501-3503","source":"Crossref","is-referenced-by-count":164,"title":["MSAViewer: interactive JavaScript visualization of multiple sequence alignments"],"prefix":"10.1093","volume":"32","author":[{"given":"Guy","family":"Yachdav","sequence":"first","affiliation":[{"name":"1Bioinformatik - I12, TUM, Garching, 85748, Germany"},{"name":"2Biosof LLC, New York, NY 10001, USA"}]},{"given":"Sebastian","family":"Wilzbach","sequence":"additional","affiliation":[{"name":"1Bioinformatik - I12, TUM, Garching, 85748, Germany"}]},{"given":"Benedikt","family":"Rauscher","sequence":"additional","affiliation":[{"name":"1Bioinformatik - I12, TUM, Garching, 85748, Germany"}]},{"given":"Robert","family":"Sheridan","sequence":"additional","affiliation":[{"name":"3Department of Systems Biology, Harvard Medical School, Boston, MA 02115, USA"}]},{"given":"Ian","family":"Sillitoe","sequence":"additional","affiliation":[{"name":"4Institute of Structure and Molecular Biology, University College London, London, UK"}]},{"given":"James","family":"Procter","sequence":"additional","affiliation":[{"name":"5Biological Chemistry and Drug Discovery, University of Dundee, Dundee, UK"}]},{"given":"Suzanna E.","family":"Lewis","sequence":"additional","affiliation":[{"name":"6Lawrence Berkeley National Laboratory, Berkeley, USA"}]},{"given":"Burkhard","family":"Rost","sequence":"additional","affiliation":[{"name":"1Bioinformatik - I12, TUM, Garching, 85748, Germany"},{"name":"2Biosof LLC, New York, NY 10001, USA"}]},{"given":"Tatyana","family":"Goldberg","sequence":"additional","affiliation":[{"name":"1Bioinformatik - I12, TUM, Garching, 85748, Germany"}]}],"member":"286","published-online":{"date-parts":[[2016,7,13]]},"reference":[{"key":"2023020114073004900_btw474-B1","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. Mol. Biol"},{"key":"2023020114073004900_btw474-B2","doi-asserted-by":"crossref","first-page":"55","DOI":"10.12688\/f1000research.3-55.v1","article-title":"BioJS: an open source standard for biological visualisation - its status in 2014","volume":"3","author":"Corpas","year":"2014","journal-title":"F1000Res"},{"key":"2023020114073004900_btw474-B3","doi-asserted-by":"crossref","first-page":"1394","DOI":"10.1101\/gr.2289704","article-title":"Mauve: multiple alignment of conserved genomic sequence with rearrangements","volume":"14","author":"Darling","year":"2004","journal-title":"Genome Res"},{"key":"2023020114073004900_btw474-B4","doi-asserted-by":"crossref","first-page":"1451","DOI":"10.1101\/gr.4086505","article-title":"Galaxy: a platform for interactive large-scale genome analysis","volume":"15","author":"Giardine","year":"2005","journal-title":"Genome Res"},{"key":"2023020114073004900_btw474-B5","doi-asserted-by":"crossref","first-page":"W350","DOI":"10.1093\/nar\/gku396","article-title":"LocTree3 prediction of localization","volume":"42","author":"Goldberg","year":"2014","journal-title":"Nucleic Acids Res"},{"key":"2023020114073004900_btw474-B6","doi-asserted-by":"crossref","first-page":"S8","DOI":"10.1186\/1753-6561-8-S2-S8","article-title":"Sequence Bundles: a novel method for visualising, discovering and exploring sequence motifs","volume":"8","author":"Kultys","year":"2014","journal-title":"BMC Proc"},{"key":"2023020114073004900_btw474-B7","doi-asserted-by":"crossref","first-page":"2947","DOI":"10.1093\/bioinformatics\/btm404","article-title":"Clustal W and Clustal X version 2.0","volume":"23","author":"Larkin","year":"2007","journal-title":"Bioinformatics"},{"key":"2023020114073004900_btw474-B8","doi-asserted-by":"crossref","first-page":"3276","DOI":"10.1093\/bioinformatics\/btu531","article-title":"AliView: a fast and lightweight alignment viewer and editor for large datasets","volume":"30","author":"Larsson","year":"2014","journal-title":"Bioinformatics"},{"key":"2023020114073004900_btw474-B9","doi-asserted-by":"crossref","first-page":"249","DOI":"10.12688\/f1000research.5486.1","article-title":"Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)","volume":"3","author":"Martin","year":"2014","journal-title":"F1000Res"},{"key":"2023020114073004900_btw474-B10","doi-asserted-by":"crossref","first-page":"i347","DOI":"10.1093\/bioinformatics\/btm174","article-title":"Prediction of DNA-binding residues from sequence","volume":"23","author":"Ofran","year":"2007","journal-title":"Bioinformatics"},{"key":"2023020114073004900_btw474-B11","first-page":"185","article-title":"Flexible sequence similarity searching with the FASTA3 program package","volume":"132","author":"Pearson","year":"2000","journal-title":"Methods Mol. Biol"},{"key":"2023020114073004900_btw474-B12","doi-asserted-by":"crossref","first-page":"S71","DOI":"10.1093\/bioinformatics\/18.suppl_1.S71","article-title":"Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues","volume":"18","author":"Pupko","year":"2002","journal-title":"Bioinformatics"},{"key":"2023020114073004900_btw474-B13","doi-asserted-by":"crossref","first-page":"204","DOI":"10.1006\/jsbi.2001.4336","article-title":"Review: protein secondary structure prediction continues to rise","volume":"134","author":"Rost","year":"2001","journal-title":"J. Struct. Biol"},{"key":"2023020114073004900_btw474-B14","doi-asserted-by":"crossref","first-page":"412","DOI":"10.1016\/j.sbi.2011.03.014","article-title":"Protein disorder\u2013a breakthrough invention of evolution?","volume":"21","author":"Schlessinger","year":"2011","journal-title":"Curr. Opin. Struct. Biol"},{"key":"2023020114073004900_btw474-B15","doi-asserted-by":"crossref","first-page":"6097","DOI":"10.1093\/nar\/18.20.6097","article-title":"Sequence logos: a new way to display consensus sequences","volume":"18","author":"Schneider","year":"1990","journal-title":"Nucleic Acids Res"},{"key":"2023020114073004900_btw474-B16","doi-asserted-by":"crossref","first-page":"1189","DOI":"10.1093\/bioinformatics\/btp033","article-title":"Jalview Version 2\u2013a multiple sequence alignment editor and analysis workbench","volume":"25","author":"Waterhouse","year":"2009","journal-title":"Bioinformatics"},{"key":"2023020114073004900_btw474-B17","doi-asserted-by":"crossref","first-page":"187","DOI":"10.1016\/j.chom.2014.07.008","article-title":"Ebola virus VP24 targets a unique NLS binding site on karyopherin alpha 5 to selectively compete with nuclear import of phosphorylated STAT1","volume":"16","author":"Xu","year":"2014","journal-title":"Cell Host Microbe"},{"key":"2023020114073004900_btw474-B18","doi-asserted-by":"crossref","first-page":"W337","DOI":"10.1093\/nar\/gku366","article-title":"PredictProtein\u2013an open resource for online prediction of protein structural and functional features","volume":"42","author":"Yachdav","year":"2014","journal-title":"Nucleic Acids Res"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/32\/22\/3501\/49027039\/bioinformatics_32_22_3501.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/32\/22\/3501\/49027039\/bioinformatics_32_22_3501.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,1]],"date-time":"2023-02-01T23:57:45Z","timestamp":1675295865000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/32\/22\/3501\/2525598"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2016,7,13]]},"references-count":18,"journal-issue":{"issue":"22","published-print":{"date-parts":[[2016,11,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btw474","relation":{},"ISSN":["1367-4803","1367-4811"],"issn-type":[{"value":"1367-4803","type":"print"},{"value":"1367-4811","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2016,11,15]]},"published":{"date-parts":[[2016,7,13]]}}}